Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0228 ATGGCATCTGCTGAAGTTGAGTACCGATGCTTTGTCGGTGGGCTCGCGTGGGCCACCGATAACGATGCCCTCGAGAAGGCCTTCGCTCCTTACGGCGATGTCATCGAATCGAAGGTTATTAACGACCGTGAGACCGGAAGGTCAAGAGGTTTCGGATTCGTTACCTTCTCCTCAGAGCAGGCTATGAAGGACGCGATCGAGGGAATGAACGGTCAGAACATTGATGGCCGAAACATTACCGTGAACGAGGCTCAGTCTCGTGGAAGAGGCGGTGGTGGTGGTGGATACGGCGGCGGAGGCGGAGGCGGTGGTTACAGCCGTGGTGGTGGTGGGTATGGCGGAGGTGGTGCCCGCCGTGAGGGGGGTTACAACAGGAACGGAGGCGGGGGATACGGTGGCGGCGGTGGCGGTTATAGTGGTGGATATGGCGGTGGACGTGACCGCGGTTATGGTGATGGTGGATCTCGCTACTCTAGGGGTGGCGGTGAAACTGAAGGAAGCTGGAGGGACTGA 513 0.5906 MASAEVEYRCFVGGLAWATDNDALEKAFAPYGDVIESKVINDRETGRSRGFGFVTFSSEQAMKDAIEGMNGQNIDGRNITVNEAQSRGRGGGGGGYGGGGGGGGYSRGGGGYGGGGARREGGYNRNGGGGYGGGGGGYSGGYGGGRDRGYGDGGSRYSRGGGETEGSWRD 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0228 170 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Glsi01g0228 170 Gene3D - 2 124 IPR012677 -
Glsi01g0228 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Glsi01g0228 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Glsi01g0228 170 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 157 - -
Glsi01g0228 170 CDD RRM2_NsCP33_like 9 84 - -
Glsi01g0228 170 MobiDBLite consensus disorder prediction 70 170 - -
Glsi01g0228 170 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0228 Glsi-ChrGlsi01 1805152 1805929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0228 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 3.41e-07 47.4