Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0223 ATGGGCTCAAACTCTCTAAACAAACACAAGCTCTCTGACTCCTCTTGGACACCTAGACAGAATAAGCTGTTTGAAGAGGCACTTGCAAAGTATGATAAGGACACCCCTGGGCGATGGCAGAATGTGGCCAAAGCAGTAGGTGGGAAATCCGCTGAGGAAGTTAAGAGACACTATGAGATCCTCTTGGAGGATCTCAGACACATAGAATCTGGTCATGTTCCAATCCCGAACTACAAAAACGGAGGTAGCAGCAGCAATGGTGATGAAGAAGAGAGGCTTCTGAAGTATCTTAAGCTGAATTGA 303 0.4587 MGSNSLNKHKLSDSSWTPRQNKLFEEALAKYDKDTPGRWQNVAKAVGGKSAEEVKRHYEILLEDLRHIESGHVPIPNYKNGGSSSNGDEEERLLKYLKLN 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0223 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Glsi01g0223 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 4 88 IPR044636 GO:0003700
Glsi01g0223 100 CDD SANT 15 62 IPR001005 -
Glsi01g0223 100 SMART sant 12 64 IPR001005 -
Glsi01g0223 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Glsi01g0223 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Glsi01g0223 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Glsi01g0223 100 MobiDBLite consensus disorder prediction 72 91 - -
Glsi01g0223 100 FunFam Transcription factor SRM1 8 75 - -
Glsi01g0223 100 Gene3D - 8 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0223 Glsi-ChrGlsi01 1780966 1781827 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi01g0223 Myb_DNA-binding 1.4e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0223 01 1780966 1781827 Glsi01g0223 01 1780966 1781827 ECH
Glsi01g0223 01 1780966 1781827 Glsi09g0570 09 3961616 3961837 ECH