Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0222 ATGTTACACTGTCTGAATAGTTCGGGGAATCTCGCAGGTGCCTCCTCGGAGATGACAGTGTCGGAAAGGCAAAGGGAGAGGATGAAGTGGCAACAAGAGCAAAACCAGCAGCACCGTAGCTATTTTTGTGGAACTGGGCTTGACGGCGAGTTCTCGTCTCTGCAAGTTCAGAATTCTCAGGGGTTGATGATGATGAGTGGTGGCAGTGGAGAATATTCGCTTGGTGAGGTGGTTGCTGCTCCGTCAATGAAGCCCGACCCGGTATCGGAGAATGGGTGGCACGAATTGGGTAGGCTCGAGATGGCCCATATGGATTTCGTATCTTCCGGAATGGTTCCTGGGTTTGACGCGAACCCTGCAATTTCAAGAACTTCTAGCTGCCCGCCGTCTGTGGCGGCGGCTGCTGCGCCAACGTCATTTGCCGTGGCCAAAGGGAAAGAATCAGTAGTTTCTGGTTCGGCGATGGAGAAGACGAGATTGGCAAGTGGAAGAGAGAGTTTCAAGAAGAGGAAATCTGACAAGGCTCAGAACCCCAAGATTGTTGCAGAAAATGGTACCAATAATAAGAGGCTGAAAGGAAATGCCGAGGAAGGGGAATCCAAAATCACAGAGCCAACCAGCATCAAGAACAAAACAACCACCACAAATAACAACGACAGAGAAACCTCTGCAGATTCTTCAAAGGACAAGTCCAAAGCATCCGAGGTTCAAAAGCCTGACTACATTCATGTCCGAGCTCGTCGTGGCCAAGCCACTGATAGCCATAGCCTAGCCGAAAGAGTTAGAAGGGAAAGAATTAGTGAGAGAATGAAGTATCTGCAAGATTTAGTGCCGGGTTGCAACAAAATTACAGGGAAAGCTGGAATGCTTGAGGAAATCATCAACTATGTTCAATCTCTACAACAACAAGTAGAGTTCTTGTCAATGAAATTAGCTGCTGCAAACCCAAGGCTTGACTTCAACATTGATGATCTGTTCACCAAAGAGGTGTTTTCGGCTTGTGCTCCAAGTTTTCCAACCATAGGGATGCAACCAGACATGGCTAACCCTTCCTATCTTCAGTTTGATTCAGCACAACATCTTGCTTCTTGTTGCGCATTAGATATGGGGACAAACCCTCCTGATATGATGCTCCGAAGGACCATTAGCGCCCCTGAATCGATGCCACCCGAAACGTTTCCTGACTCATCCTGTTTCACTCAAATTCTACCCACCCCAACTTGGGAAGCTGGTTTGCAAAACCTTTACAATGTGGCTTTTGATCAAGCAAGATCAACAACATCCTTTCCTTCTCAGCCATTCACAGGTCTAATTGAAGCTAGCAATTTAAAGATGGAGATGTAA 1344 0.4717 MLHCLNSSGNLAGASSEMTVSERQRERMKWQQEQNQQHRSYFCGTGLDGEFSSLQVQNSQGLMMMSGGSGEYSLGEVVAAPSMKPDPVSENGWHELGRLEMAHMDFVSSGMVPGFDANPAISRTSSCPPSVAAAAAPTSFAVAKGKESVVSGSAMEKTRLASGRESFKKRKSDKAQNPKIVAENGTNNKRLKGNAEEGESKITEPTSIKNKTTTTNNNDRETSADSSKDKSKASEVQKPDYIHVRARRGQATDSHSLAERVRRERISERMKYLQDLVPGCNKITGKAGMLEEIINYVQSLQQQVEFLSMKLAAANPRLDFNIDDLFTKEVFSACAPSFPTIGMQPDMANPSYLQFDSAQHLASCCALDMGTNPPDMMLRRTISAPESMPPETFPDSSCFTQILPTPTWEAGLQNLYNVAFDQARSTTSFPSQPFTGLIEASNLKMEM 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0222 447 MobiDBLite consensus disorder prediction 190 204 - -
Glsi01g0222 447 MobiDBLite consensus disorder prediction 222 241 - -
Glsi01g0222 447 MobiDBLite consensus disorder prediction 147 241 - -
Glsi01g0222 447 MobiDBLite consensus disorder prediction 205 221 - -
Glsi01g0222 447 MobiDBLite consensus disorder prediction 161 177 - -
Glsi01g0222 447 SMART finulus 256 306 IPR011598 GO:0046983
Glsi01g0222 447 MobiDBLite consensus disorder prediction 1 19 - -
Glsi01g0222 447 MobiDBLite consensus disorder prediction 1 24 - -
Glsi01g0222 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 318 IPR036638 GO:0046983
Glsi01g0222 447 CDD bHLH_AtBPE_like 240 325 - -
Glsi01g0222 447 Pfam Helix-loop-helix DNA-binding domain 254 301 IPR011598 GO:0046983
Glsi01g0222 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 250 300 IPR011598 GO:0046983
Glsi01g0222 447 FunFam Basic helix-loop-helix transcription factor 247 319 - -
Glsi01g0222 447 Gene3D - 247 321 IPR036638 GO:0046983
Glsi01g0222 447 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 160 358 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0222 Glsi-ChrGlsi01 1762276 1764578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0222 157 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 47.445 1.01e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi01g0222 HLH 5.5e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0222 01 1762276 1764578 Glsi01g0222 01 1762276 1764578 ECH
Glsi01g0222 01 1762276 1764578 Glsi08g1949 08 13767985 13769759 ECH