Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0180 ATGGAGAAGATAGAAACAAAACACACCACCATCCTAGGACAACATTTTCTATCCTCCTCGTCATCGATGTTTCATTCGATGGCTACCCTCCTGGTCCTGCTCTTGTCCTTGTCTTCTATCTTCACCACCCCTGTTTTCTCTGCTGACCCTCCATCTGCCTCCGCCTCCTTCACTCCCAAAGACAATTTCCTCATTGATTGTGGTGCTGAATCTGTTTCCCCCATATTCCCTGATGGAAGAAGTTTCAAATCTGACCCAGAATCCAATTCTCTCTTACAAGCCAATGATGATAACAAAGTCACAGATAAAGATGCTAATGTCCCCTCCCCCATTTACTCTAATGCCAGGATTTTCACCCAGGATGCTAGATACTCCTTTCATTTGTCTCAACCTGGGTTTCACTGGGTTCGCCTCCATTTCTTCCCTGTCAAAAACAATGTCTTTGATCTTAATAAGGCCACTTTCTCGGTCAATACAGACAAGTACGTTCTCCTCCATAGCTTCAATATTAACAACAATGACAAACCCATTCTCAAAGAGTACCTTATCAACGCAACTGAAGAAAATTTCACCTTGTCCTTCATCCCTTTGAAGAATTCAGCTGCTTTTATTAACGCCATTGAAGTTGTTTCAGCTCCTGACAACCTTATCTTCGACAAAGGCTCATCACTTTTCCCTGTTGGGGATTTTAATGGTTTAACAAATTTTGCTTTCCAACCTCTTTATAGGCTCAACAATGGAGGACCTTTAATCACCCCAGCAAATGACACTCTGGGAAGGACATGGGTTTCTGATGAGCCGTATCTTACGAACAAGAACTTGGCTAAGAGCGCCTCCTCAGCTCCCAACATCATCAAATTCCCCAAAAACGTACCCACGATTTCTCCTCTGGTGGCACCTCAAACTGTGTATGCCTCTGCCGCTGAGATGGGTGATGCTGCTGTGAATCAGCCTAACTTTAACGTCTCATGGAAATTTGATGTGGATGGTGCTTTCAATTACCTCATCAGATTACATTTCTGTGACATTGTGAGCAAAGGGTTGAATCAGCTCTACTTTAACGTCTATGTCAACGAGAAAATGGCCATTTCTGATCTTGATTTGTCTGCTATTAATGGTGCCTTGGCAGTCCCATACTACAAAGATATAGTAGTGAATGCTTCTTTGATGAGTCAGGGACTATTAGTTCAAGTTGGCCCAGCTAATGCTGATGGTGGAAATGCTAATGCCATTATGAACGGCATAGAGGTCATGAAAATGAGCAATTCCGTGAATAGTTTAGATGGGGAATTTGGGGTTGATGGAAAAAGAGCCGATGGTTCTAGCCGTGGGACAGTGGCTGCTGTTGGGTTCGCCATGATGTTTGGAGCCTTTGTGGGTCTTGGTGCTATGGTGTACAAATGGCAAAGGAGGCCCCAAGATTGGCAAAAGAGGAACAGCTTCTCTTCATGGTTGCTTCCTCTGCATGCCACTGACTCAAGCTTTACCAAGAGCTCAATGGGGTCCCACAAGAGCAACTTCAATTCTTCAACCACGGGCTTAGGCAGGTACTTCTCCTTCGCAGAGCTTCAGGAAGCCACTAAGAACTTTGACTCCAAAGCTATTATTGGTGTTGGTGGGTTTGGTAATGTCTATTTGTGTGTGATTGATGACGGGACTCAAGTTGCTGTCAAGAGAGGAAACCCACAATCAGAACAAGGTATCAATGAGTTTCAGACAGAGATTCAAATGTTGTCTAAGTTAAGACACAGACATTTGGTGTCTCTCATTGGATATTGTGATGAAAACGATGAGATGATCTTGGTTTATGAGTACATGTCCAATGGGCCTTTCAGAGACCATCTTTATGGCAAGAACTTGCCTCCTCTTTCTTGGAAGCAAAGGTTAGAGATCTGCATAGGATCAGCTCGCGGCCTTCACTATCTTCACACAGGAACTGCACAAGGCATCATCCATCGTGATGTTAAGACTACCAACATTCTCCTAGACGACAATTTCACAGCTAAGGTTGCTGATTTTGGTCTTTCTAAGGATGCTCCTATGGGACAAGGCCATGTCAGTACAGCAGTTAAAGGTAGTTTTGGGTATCTAGACCCTGAATACTTCAGGAGGCAGCAATTAACAGATAAATCTGACGTTTATTCATTTGGGGTTGTCCTACTAGAGGCCCTTTGTGCAAGGGCACCCCTGTGCCCTCAATTACCCAGAGAACAAGTGAACTTAGCTGACTGGGCAATGCAGTGGAAAAGAAAGGGCTTGCTGGACAAAATCATAGACCCTTTTCTTGTAGGGACTATTAACCCAGAATCTATGAAGAAATTTGCTGAGGCTGCTGAGAAATGCTTGTCTGATTATGGGGTGGATAGGCCTTCCATGGGGGATGTTCTCTGGAACTTAGAGTATGCTTTGCAGCTTCAAGAAGCTTTCACACAAGGAAAATCTGAAGAAGAGACTAAGCCATCTTCTGCTGCTTCTAACTCCCCTCCTCCTCTGCCTCCCACAGCTCCAACCTCAGAAAATGATCATGACTCCCCCGTTCAGAATAATGAAGCAGCAAATAATAATCAAGTTCAAGGCATTGATGACCATTCAGGAACTGCAATGTTTGCTCAATTTACTAATCTTACTGGAAGGTGA 2637 0.4399 MEKIETKHTTILGQHFLSSSSSMFHSMATLLVLLLSLSSIFTTPVFSADPPSASASFTPKDNFLIDCGAESVSPIFPDGRSFKSDPESNSLLQANDDNKVTDKDANVPSPIYSNARIFTQDARYSFHLSQPGFHWVRLHFFPVKNNVFDLNKATFSVNTDKYVLLHSFNINNNDKPILKEYLINATEENFTLSFIPLKNSAAFINAIEVVSAPDNLIFDKGSSLFPVGDFNGLTNFAFQPLYRLNNGGPLITPANDTLGRTWVSDEPYLTNKNLAKSASSAPNIIKFPKNVPTISPLVAPQTVYASAAEMGDAAVNQPNFNVSWKFDVDGAFNYLIRLHFCDIVSKGLNQLYFNVYVNEKMAISDLDLSAINGALAVPYYKDIVVNASLMSQGLLVQVGPANADGGNANAIMNGIEVMKMSNSVNSLDGEFGVDGKRADGSSRGTVAAVGFAMMFGAFVGLGAMVYKWQRRPQDWQKRNSFSSWLLPLHATDSSFTKSSMGSHKSNFNSSTTGLGRYFSFAELQEATKNFDSKAIIGVGGFGNVYLCVIDDGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMSNGPFRDHLYGKNLPPLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDDNFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEALCARAPLCPQLPREQVNLADWAMQWKRKGLLDKIIDPFLVGTINPESMKKFAEAAEKCLSDYGVDRPSMGDVLWNLEYALQLQEAFTQGKSEEETKPSSAASNSPPPLPPTAPTSENDHDSPVQNNEAANNNQVQGIDDHSGTAMFAQFTNLTGR 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0180 878 FunFam Receptor-like protein kinase FERONIA 606 819 - -
Glsi01g0180 878 CDD STKc_IRAK 536 800 - -
Glsi01g0180 878 FunFam Putative receptor-like protein kinase 62 213 - -
Glsi01g0180 878 SMART serkin_6 530 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0180 878 MobiDBLite consensus disorder prediction 809 865 - -
Glsi01g0180 878 Pfam Protein kinase domain 532 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0180 878 FunFam receptor-like protein kinase FERONIA 493 605 - -
Glsi01g0180 878 Pfam Malectin-like domain 65 420 IPR024788 -
Glsi01g0180 878 Gene3D - 238 422 - -
Glsi01g0180 878 Gene3D - 62 213 - -
Glsi01g0180 878 Gene3D Phosphorylase Kinase; domain 1 490 605 - -
Glsi01g0180 878 MobiDBLite consensus disorder prediction 837 865 - -
Glsi01g0180 878 FunFam Receptor-like protein kinase FERONIA 237 422 - -
Glsi01g0180 878 MobiDBLite consensus disorder prediction 809 824 - -
Glsi01g0180 878 ProSiteProfiles Protein kinase domain profile. 530 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0180 878 ProSitePatterns Protein kinases ATP-binding region signature. 536 558 IPR017441 GO:0005524
Glsi01g0180 878 Gene3D Transferase(Phosphotransferase) domain 1 606 826 - -
Glsi01g0180 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Glsi01g0180 878 PANTHER OS07G0166700 PROTEIN 516 806 IPR045272 GO:0004714|GO:0006468
Glsi01g0180 878 SUPERFAMILY Protein kinase-like (PK-like) 513 797 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0180 Glsi-ChrGlsi01 1475177 1477813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0180 57 878 Receptor kinase-like Gene Family AT4G39110 68.585 0.0 1186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Glsi01g0180 Malectin_like 1.3e-37 CL0202