Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0177 ATGCTCTGTCTTAGGGATCCTTTGCATAATTCGTATCCTGAGACACCAGTTCTTTCCGGTAATATGACATTGTATATGAACCCTGGTTCGTATTCAGATGCATTGTCTGGCACTTCTCAGCAGCTTAATAACTGCTTTGCAATTCCATCAATGGGTGCTTCACATTCAACTCCTGAACAGCAAGAAATCTTAGAAAATCTTGGTGGTTTACAAAGCGGGGGTCATGATTTCAATGCATGGAGGGAGGGTAGAAATGAGATGCTAGTCACACATCCAGTGGATGGACAGAACTTGCAGGTTCAGGGATTATCTCTCAGCCTTGGAACCCAAATACCATCAGGAATCCAAATGTCGGCTATTCATGACCGGAATCCGAATCCAGGTTTTCATTCAGTTTTGTGTCCTAATCCTTCAATTTCAGGTGATGGTGGCTATAGAAGTGGCCCATCTGGGGATGAACGTTTGAGACAAACTGACATGTTGCCAGCTGGTTTACCTGAACGTAATCAAGATATAAACAGAGGAGATTTTTCTTTGCATGGAATGTCAACTGTTGCTAGAACAATTCCTAACTCCAAATACCTCAAGGCAGCACAACAACTGCTTGATGCAGTAGTTGGCCTCCAAAAAGCTATAAAACGACCTGAAATGAAAAGCCATAGCACCCATAAGGACTCTAGAAATTGTTTGAAGGAGGATGATGGGAGACTTGAAAATGAAAGGGCCCCTGCAAATGGATTGCATAGCTCTCAAGATTCAGTTGGTAACTCCTCTTGTGAGCTTTCACATGCTGAAAATCAAGAGCTGCATAACAAGTTAACAAAGCTTTTTTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTATCATCAGATGCAAATTGTGGTATCATCATTTGATGTGATAGCAGGACGTGGGGCTGCGAAACCATACACAGCACTTGCACTCCAAACCATTTCACGCCACTTTCGGTGCTTGCGTGATGCAATCAGTGGCCAAATCAGTGCAATACAGAAAAACCTTGGGGAGCAAGATGCTTCAGGAAATAATAAAGGAGTTGGAATATCAAGACTCCGGTTTGTAGACCAACAACTCAGGCAACAGAGGGCTCTTCAGCAGCTTGGTGTAATACAACATGCATGGAGGCCACAAAGGGGGCTGCCAGAAAGCTCTGTTTCAATTCTTCGAGCTTGGCTGTTTGAGCATTTCCTTCATCCCTACCCTAAGGATTCTGAGAAGATCATGCTAGCAAGGCAGACAGGCTTGAGTAGGAGCCAGGTCTCGAATTGGTTTATAAATGCACGAGTGCGTCTATGGAAACCTATGATTGAGGACATGTACAAGGAAGAGATTGGCGATGCTGACATGGACTCCAGTTCTTCCTCTGAAAATGGATCCAAGATAACAAAAAGTGATGTCAAGACCTCCAATGATGTCAGTGATGATTTGCAGCACCGTCAAAGTTCAACGGACAATGAAAATTACAGTGGTGGACAAGCCAAGGACATCAGATCCGATCATGCTCTCGATACAGAAATCATAGAATCCAGTAGAATAGCTGGTCTCCGTAACGGAGGTCCTGGTGTTGAGCCTGAATATGGTTTAGTAAAGCAAACTGGGGAGCAAAGGCCCAATTTTGATGATTGTGGTCTTCTCCCAGAAGGCACAGTTGTTCAGTCTGGTGGACAAGCCAATGACAGGGTTATGCCGGTTGCTTCTACATGCCAAATGTCAGAGTTGGGGAGGTTTGAGACAGGAAGTGGAGTGTCTCTAACATTGGGTTTGCAGCATTGTGAGCGTGGTAATTTCATGTCTGGTGAGACACATTATAGTTTTGTTTCCATGAGGGAGGATGACATCTACAATGCCGGTGGAGGTTCTTCGGTAGGAGCCGAGACAGCAGAACTTGAGTGTATGAGTTCTGGAAACCAGCAGCAAAGGTTTAGTTCCCCCCATTTGTTGCATGATTTTGTTGTATAA 1986 0.4416 MLCLRDPLHNSYPETPVLSGNMTLYMNPGSYSDALSGTSQQLNNCFAIPSMGASHSTPEQQEILENLGGLQSGGHDFNAWREGRNEMLVTHPVDGQNLQVQGLSLSLGTQIPSGIQMSAIHDRNPNPGFHSVLCPNPSISGDGGYRSGPSGDERLRQTDMLPAGLPERNQDINRGDFSLHGMSTVARTIPNSKYLKAAQQLLDAVVGLQKAIKRPEMKSHSTHKDSRNCLKEDDGRLENERAPANGLHSSQDSVGNSSCELSHAENQELHNKLTKLFSMLDEVDSRYKQYYHQMQIVVSSFDVIAGRGAAKPYTALALQTISRHFRCLRDAISGQISAIQKNLGEQDASGNNKGVGISRLRFVDQQLRQQRALQQLGVIQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLSRSQVSNWFINARVRLWKPMIEDMYKEEIGDADMDSSSSSENGSKITKSDVKTSNDVSDDLQHRQSSTDNENYSGGQAKDIRSDHALDTEIIESSRIAGLRNGGPGVEPEYGLVKQTGEQRPNFDDCGLLPEGTVVQSGGQANDRVMPVASTCQMSELGRFETGSGVSLTLGLQHCERGNFMSGETHYSFVSMREDDIYNAGGGSSVGAETAELECMSSGNQQQRFSSPHLLHDFVV 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0177 661 MobiDBLite consensus disorder prediction 459 475 - -
Glsi01g0177 661 MobiDBLite consensus disorder prediction 138 157 - -
Glsi01g0177 661 Pfam Homeobox KN domain 400 439 IPR008422 GO:0003677|GO:0006355
Glsi01g0177 661 SMART prehox3 183 334 IPR006563 -
Glsi01g0177 661 CDD homeodomain 383 444 IPR001356 GO:0003677
Glsi01g0177 661 MobiDBLite consensus disorder prediction 456 504 - -
Glsi01g0177 661 MobiDBLite consensus disorder prediction 476 490 - -
Glsi01g0177 661 Gene3D - 380 457 - -
Glsi01g0177 661 ProSiteProfiles 'Homeobox' domain profile. 380 443 IPR001356 GO:0003677
Glsi01g0177 661 MobiDBLite consensus disorder prediction 240 261 - -
Glsi01g0177 661 FunFam BEL1-like homeodomain protein 4 386 448 - -
Glsi01g0177 661 Pfam Associated with HOX 189 333 IPR006563 -
Glsi01g0177 661 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 468 - -
Glsi01g0177 661 SUPERFAMILY Homeodomain-like 384 450 IPR009057 -
Glsi01g0177 661 SMART HOX_1 383 447 IPR001356 GO:0003677
Glsi01g0177 661 MobiDBLite consensus disorder prediction 244 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0177 Glsi-ChrGlsi01 1460246 1462803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0177 11 661 Homeobox Transcription Factor Family AT4G34610 42.729 5.26e-132 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi01g0177 POX 1.2e-47 No_clan