Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0176 ATGGCTAAACCAAAAGCTCCAAGACGAACCCTAGAGTCATACACAGTCAAACACATAAGCAAAACCATTAAAGCCGGCGACTGCGTGCTTATGAGGCCTTCCGATCCGTCGAAGCCTTCATATGTGGCTAAGATCGAGGGGATCGAAGCGGACTCGCGTGGCGCTAACGTGAAGGTCCACGTCCGTTGGTACTACCGGCCGGAGGAGTCAATCGGCGGCCGGAGGCAGTTTCACGGTTCTAAGGAAGTTTTCCTATCTGATCACTTTGATGTTCAGAGCGCCGACACGATCGAAGGCAAGTGTACGGTTCACAGTTTCAAGAGCTACACGAAGCTCGACGCTGTTGGAAACGACGATTTCTTCTGTCGCTTTGAGTACAATTCCGCCACTGGAGCCTTCAATCCTGATAGAGTCGCCGTGTACTGTAAATGTGAGATGCCCTACAACCCTGATGACTTAATGGTCCAGTGTGAGGGTTGCAGTGATTGGTTTCATCCAGCTTGTATAGACATGACAGTGGAGGAAGCCAAAAGACTTGACCACTTCTACTGTGAAAGTTGTTCCGCAGAAGGTCAAAAGAAGTTGCAAAATTCTCATTCTGCTTCAAGACACTCAGATACTAAGGTGGATACAAAACGCCGTCGAAGGTGA 651 0.4916 MAKPKAPRRTLESYTVKHISKTIKAGDCVLMRPSDPSKPSYVAKIEGIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFYCESCSAEGQKKLQNSHSASRHSDTKVDTKRRRR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0176 216 PANTHER OS08G0421900 PROTEIN 5 208 - -
Glsi01g0176 216 Pfam PHD-finger 141 189 IPR019787 -
Glsi01g0176 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Glsi01g0176 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Glsi01g0176 216 SUPERFAMILY FYVE/PHD zinc finger 131 193 IPR011011 -
Glsi01g0176 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Glsi01g0176 216 MobiDBLite consensus disorder prediction 194 216 - -
Glsi01g0176 216 FunFam Bromo-adjacent homology (BAH) domain-containing protein 134 204 - -
Glsi01g0176 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Glsi01g0176 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Glsi01g0176 216 Gene3D - 2 133 IPR043151 -
Glsi01g0176 216 SMART PHD_3 141 188 IPR001965 -
Glsi01g0176 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0176 Glsi-ChrGlsi01 1444915 1448267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0176 41 139 Core DNA Replication Machinery Family AT4G14700 29.293 2.60e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi01g0176 BAH 1.6e-22 No_clan