Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0173 ATGTATTTAGTGGTGTTCTTTATGATCAAGGACCTCAAAGCTTCTCTGCTAATGGTGGTCGTGACACCTCCTCAGGCCCTCTTCTTCATCATCAGCAGCACAACCAAATCACTCGTGCCTGAACTTTGGCTCCCAGGGCCGAAGTTTCTTGATGCTCAAGAGACAATGAGACAAAGAAAAATCCCACAAAGTTACGTATATGATAGGCCAAAAACTGAGGAAGATGTGGATATGATATTGCTTAATCGCTCCGTGATCCTCTATCAATCTATCTCTTTTCAGAATCTTGGGGCAGAGGAAAGAGAGAGAATGGGCGAGGTAGGGCGAGGAGGTTGTTGTCCGCCGATGGATCTGTTCCGGTCGGAGCCGATGCAACTGGTTCAGGTCATCATTCCCATGGAGTCTGCTCATCTCACTGTCTCCTATCTCGGTGAACTCGGCCTTCTTCAGTTCAAAGATCTCAATGCAGAGAAGAGCCCTTTTCAACGGACTTATGCGAATCAGCTAAGAAGATGTGGAGAGATGGCACGTAAATTACGTTTTTTCAAGGAGCAAATGTTGAAGGCAGGTGTTTTGCCCATAGATTCTTCTACACAAGTTGACGCAAACATTGATGCTTTAGAGGTAAAACTTGCAGAACTTGAGTCAGAATTAATTGAGATGAATGCAAATGGTGAAAAGTTGCAACGCTCTCACAATGAACTTGTGGAATATAAGCTTGTTCTGCAGAAGGCTGGTGAGTTTTTCCAGTCAGCTCAAAGTCATGCTATAGAGCAGTGTAGAGAATATGAATCACGCAATCCAAGTGGAGAATCTATGGAAACACCATTGTTACAGGACCAAGAATTGTCAATGGATACATCGAACCTAGTGAAGTTGGGGTTTCTAGCTGGTCTTGTTCCCAGGGAGAAGTCCATGGCATTTGAGAGAATTTTATTTCGCGCTACTCGGGGCAATGTGTTTCTGAGGCAGGTCATTATTGAAGATCCTGTCACAGACCCTGTTTCTGGAGAAAAGGTTGAGAAAAATGTATTTTTGGTCTTCCATGCTGGTGAAAGAGTAAAAGCCAAGATTCTGAAAATATGTGAGGCCTTTGGAGCAAATCGTTACCCTTTTACAGAGGAACTAGGAAAACAAGCGCAGATGATTGCTGAGGTTTCAGGAAGACTCTCAGAGTTGAAAACAACTATTGATGCAGGACTGCTGCACCGGGGTAACTTGCTACAGACTATTGGGGCTCAATTCAATCAATGGAATCTTTTGGCGAGGAAGGAGAAATCAATATATCATACCCTTAACATGCTTAGCCTTGATGTGACAAAAAAATGTCTAGTGGCTGAGGGGTGGAGTCCTGTTTTTGCAGCAAAGCAGATACAGGATGCATTAGAGCGTGCAGCATTTGACTCTAACTCCCAAGTGGGTGCCATTTTCCAAGTGTTGCATACTAGGGAGTCACCACCCACCTATTTCCGCACAAACAAATTTACTTCTTCATTTCAAGAAATTGTTGATGCATATGGGGTGGCTAAGTATCAGGAGGCAAATCCTGCTGTATATACCATTGTTACCTTTCCATTTCTTTTTGCGGTAATGTTTGGTGATTGGGGGCATGGAATATGTTTACTCCTGGCAACTTTATATTTCTTATTGAGGGAGAAAAAACTCTCTAGCCAGAAGCTTGGAGACATCATGGAGATGACTTTTGGAGGTCGTTATGTTATTTTGATGATGGCTCTCTTCTCAATCTTCACTGGTTTGATCTATAATGAGTTCTTCTCTGTCCCATTTGAACTCTTTGGTCCCTCGGCATATGAATGCCGTGACCTTTCTTGCAGGGATGCGACTACTGTGGGTTTGATAAAAGTGCGTCGTCCATACCCATTCGGAGTGGATCCTGTATGGCATGGTTCACGAAGCGAATTACCATTTCTAAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGGGTTGCCCAAATGAACCTTGGAATTATACTTAGCTTTTTCAATGCCAAATTCTTTAGGAGCAGCCTGAATATATGGTTCCAATTTATTCCAGAGATTATATTTCTCAACAGTTTGTTCGGGTACCTATCCCTCCTTATCATTGTGAAGTGGTGCAGTGGTTCACAAGCTGATTTGTACCACGTAATGATCTACATGTTTTTAAGTCCTACTGATGAGTTGGGAGAAAATCAGCTCTTTCCTGGCCAGAAAACTCTGCAGCTTGTGCTACTACTTCTGGCCCTTGTCTCTGTGCCCTGGATGTTGATCCCAAAACCTTTTCTTTTGAAGAAACAACACACAGATAGGCACCGGAATGAATCCTATGCACCACTTCAAAGCACAGAGGAGAGCTTGCTAGTGGAGTCAAATCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAATCTTTGTACACCAACTCATACATACCATTGAATTCGTACTTGGAGCAGTCTCTAATACAGCTTCTTACCTTCGTCTATGGGCCCTTAGCCTTGCTCATTCGGAGTTATCAACTGTATTCTACGAGAAGGTTCTTCTTCTTGCATGGGGGTACAACAATGTGATAATCCTCATAGTTGGTATTATTGTCTTCGTCTTTGCAACGGTTGGAGTGTTACTTGTGATGGAAACCCTCAGTGCCTTCCTCCATGCGTTACGTCTTCACTGGGTAGAGTTTCAAAACAAGTTTTATGAGGGAGATGGTTACAAGTTCTATCCTTACTCATATGCATTGCTAGATGATGAGGATGAGTAA 2769 0.428 MYLVVFFMIKDLKASLLMVVVTPPQALFFIISSTTKSLVPELWLPGPKFLDAQETMRQRKIPQSYVYDRPKTEEDVDMILLNRSVILYQSISFQNLGAEERERMGEVGRGGCCPPMDLFRSEPMQLVQVIIPMESAHLTVSYLGELGLLQFKDLNAEKSPFQRTYANQLRRCGEMARKLRFFKEQMLKAGVLPIDSSTQVDANIDALEVKLAELESELIEMNANGEKLQRSHNELVEYKLVLQKAGEFFQSAQSHAIEQCREYESRNPSGESMETPLLQDQELSMDTSNLVKLGFLAGLVPREKSMAFERILFRATRGNVFLRQVIIEDPVTDPVSGEKVEKNVFLVFHAGERVKAKILKICEAFGANRYPFTEELGKQAQMIAEVSGRLSELKTTIDAGLLHRGNLLQTIGAQFNQWNLLARKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFAAKQIQDALERAAFDSNSQVGAIFQVLHTRESPPTYFRTNKFTSSFQEIVDAYGVAKYQEANPAVYTIVTFPFLFAVMFGDWGHGICLLLATLYFLLREKKLSSQKLGDIMEMTFGGRYVILMMALFSIFTGLIYNEFFSVPFELFGPSAYECRDLSCRDATTVGLIKVRRPYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSFFNAKFFRSSLNIWFQFIPEIIFLNSLFGYLSLLIIVKWCSGSQADLYHVMIYMFLSPTDELGENQLFPGQKTLQLVLLLLALVSVPWMLIPKPFLLKKQHTDRHRNESYAPLQSTEESLLVESNHDSHGHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYNNVIILIVGIIVFVFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFYPYSYALLDDEDE 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0173 922 Pfam V-type ATPase 116kDa subunit family 142 914 IPR002490 GO:0033179|GO:0046961|GO:1902600
Glsi01g0173 922 PANTHER VACUOLAR PROTON ATPASES 118 919 IPR002490 GO:0033179|GO:0046961|GO:1902600
Glsi01g0173 922 Coils Coil 197 231 - -
Glsi01g0173 922 PIRSF ATP6V0A1 114 922 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0173 Glsi-ChrGlsi01 1417871 1430493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0173 116 922 Primary Pumps ATPases(2) AT4G39080 78.986 0.0 1321
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0173 01 1417871 1430493 Glsi01g0173 01 1417871 1430493 ECH