Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0168 ATGAAGATCCAGTGTGATGTTTGTGACAAAGTGGAGGCCTCTGTTTTCTGCCCTGCAGATGAAGCTGCTCTCTGCCATGGCTGTGACCTCAGCATCCACCATGCCAACAAGCTTGCAGGAAAACACACTCGCTTCTCTCTTCACTACCCCACCTCTAAAGACTCCCCTCTTTGTGATATCTGTCAAGAGAAGCGAGCATATCTATTTTGCCAAGAAGACAGAGCAATACTTTGCAGAGAATGTGACCTTCAAATCCACAGAGCCAACGAACATACCCAGAAACATAGCAGATTTCTTCTGACTGGGGTGAAGCTCTCTGCATGTTCTTCAGACCCACCTTCGTCGTCCTCCAATGGCAGTGAAAGGGTCACTGAATCTGGACGAAGAAGATGGAATTCTAGTGAAAATTTCAGTTCTTGTTCAATTGTGAATTCTGATACGGAAGCAGTTTCAACCAGCAGCATTTCTGAATACTTGATTAAGACAATTCCTGGTTATTGCTTTGAAGAACTTCTCGATGCTTCATTTGCACCTAATGGTTTCTGTAAGAATCATGAGCACCATCCAAGTTTTCATGATCAAGATCTTCAAGTGAGCACGTGTTTATATCCATTGGCAGCCTCCTGGGTAGCTCAAGCTCAAGTTGGTTTAAATCTTCCCCAGATTGAAATTAATGAAATAGAAAATGGAAACATAATCGCGTTACAGTTCCTGAGATCAGGAATCGCACTTCGTTCTAGCATGTCCCCTGTTTAA 756 0.4339 MKIQCDVCDKVEASVFCPADEAALCHGCDLSIHHANKLAGKHTRFSLHYPTSKDSPLCDICQEKRAYLFCQEDRAILCRECDLQIHRANEHTQKHSRFLLTGVKLSACSSDPPSSSSNGSERVTESGRRRWNSSENFSSCSIVNSDTEAVSTSSISEYLIKTIPGYCFEELLDASFAPNGFCKNHEHHPSFHDQDLQVSTCLYPLAASWVAQAQVGLNLPQIEINEIENGNIIALQFLRSGIALRSSMSPV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0168 251 CDD Bbox1_BBX-like 5 47 - -
Glsi01g0168 251 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Glsi01g0168 251 MobiDBLite consensus disorder prediction 107 122 - -
Glsi01g0168 251 Gene3D Classic Zinc Finger 1 96 - -
Glsi01g0168 251 SMART bboxneu5 53 100 IPR000315 GO:0008270
Glsi01g0168 251 SMART bboxneu5 4 47 IPR000315 GO:0008270
Glsi01g0168 251 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 214 - -
Glsi01g0168 251 CDD Bbox1_BBX-like 57 100 - -
Glsi01g0168 251 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Glsi01g0168 251 MobiDBLite consensus disorder prediction 107 130 - -
Glsi01g0168 251 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Glsi01g0168 251 FunFam B-box zinc finger protein 21 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0168 Glsi-ChrGlsi01 1386873 1388699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0168 1 186 C2C2-CO-like Transcription Factor Family AT1G75540 53.302 1.32e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi01g0168 zf-B_box 1.3e-08 No_clan