Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0157 ATGGAGGTTGCTGTTGCGAAAGCTTTGAAACCCAGTCTGCGCAGAGAATTGGCTTTCCAGCAAGCCTTCTGCGAGGAGATTTTGTGCTTGAATGCGAACAACGGCGTTTCTGGTGAGGATTTTTCTGTGGATGACCTCCTTGATTTCTCCAACGGCGAATTTCAACATGGGTCTGTTGGGAACGGAGATTGTTTTGAAGAAGACGACGACGAAGAAAAAGACAGCCTCTCTGTTTCCTCACAGGACCGTGGTGAAGATGATTCTCACTCCAATTCCAGCAGTGTTTCCGGCACCGCCGATTCTGAGTCCCTTTTTGCTAGCGAACTCGCTGTTCCGGCTGATGAGTTAGCAGACCTGGAGTGGGTTTCTCGCTTTGTCGACGATTCTCTTCCAGAGCTCTCTCTTTTGTACCCTGTCCGTTCAGAGCAAGCGAAGACGGCAACGGAAAAGCGGTCTGAACCAGGAGTTAGACGGGTCTTAGCGAATCCCGTCAAAGCGAGAAGCACCAAATCCAGAAAACCCAACGGTCGCGCCTGGTCATTAAGTCCCTTGCTTTCCATTTCGCCATCTTCGCCGTCTTCCTGCTCTTCTTCTGGGTTTTCGTCGACGCCGGCTCTTATATTCTCCGGTGCAGTACACGGCGTCGTTGAACCACCGGCGAAGAAGCAGAAGAAGCCCGAGGTTGAAGCGGGCGGGTCCCAGTTTCAGCGTCGATGCAGTCATTGTCAGGTACAGAAGACGCCCCAGTGGAGAACCGGTCCACTGGGTGCCAAAACCCTGTGTAACGCTTGCGGGGTTCGGTACAAATCTGGTCGGCTTTTTCCCGAGTATAGACCGGCCTGCAGTCCAACCTTCTCCGGCGATATTCACTCGAATAGCCATCGCAAAGTGTTAGAGATGAGGAGGAGGAAAGAGATGCCTGGACCGGAAGCCGCTTTGACCCAGACCGAAGCTGAAATTTCAGATTAG 969 0.5253 MEVAVAKALKPSLRRELAFQQAFCEEILCLNANNGVSGEDFSVDDLLDFSNGEFQHGSVGNGDCFEEDDDEEKDSLSVSSQDRGEDDSHSNSSSVSGTADSESLFASELAVPADELADLEWVSRFVDDSLPELSLLYPVRSEQAKTATEKRSEPGVRRVLANPVKARSTKSRKPNGRAWSLSPLLSISPSSPSSCSSSGFSSTPALIFSGAVHGVVEPPAKKQKKPEVEAGGSQFQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEMPGPEAALTQTEAEISD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0157 322 MobiDBLite consensus disorder prediction 303 322 - -
Glsi01g0157 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 296 - -
Glsi01g0157 322 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Glsi01g0157 322 PANTHER GATA TRANSCRIPTION FACTOR 30 311 - -
Glsi01g0157 322 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Glsi01g0157 322 Gene3D - 231 306 IPR013088 GO:0006355|GO:0008270
Glsi01g0157 322 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Glsi01g0157 322 MobiDBLite consensus disorder prediction 58 99 - -
Glsi01g0157 322 PIRSF Txn_fac_GATA_plant 11 321 IPR016679 GO:0003677|GO:0005634|GO:0045893
Glsi01g0157 322 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Glsi01g0157 322 MobiDBLite consensus disorder prediction 141 180 - -
Glsi01g0157 322 CDD ZnF_GATA 238 295 IPR000679 GO:0006355|GO:0043565
Glsi01g0157 322 FunFam GATA transcription factor 229 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0157 Glsi-ChrGlsi01 1291298 1292352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0157 8 305 C2C2-Gata Transcription Factor Family AT5G66320 46.562 3.91e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi01g0157 GATA 1e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0157 01 1291298 1292352 Glsi01g0157 01 1291298 1292352 ECH