Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0155 ATGGATGCTGTGGAAGAGTATGCTTCCGCTGAACCTTCTATTCCACTCCAACTACAACACTCCTCTACCGCCCCTGATTCTCCTGTACATCTCCTAAGCACCGCTTCACAATGCCAGACTAAGCAGCAAAGTCTGTCTATCCACGAAGGAGAAGATGAGCTGCCATCGAGTGCGGGACCAGGCTTCGCTGAAGACTTAAGGGATATTGCCGGCGAGTTTGAAGAGGCCGTGGATGTGGAAGTTGAAGAAAAGAAGCACACAGTTGTGGATGATGTGGCAGGGACCACGGAAGTGGTAGTTGGAACCGATGTGGGCGAAGCGGTTAAGGAAAGGCTGGTAGCTGAGCAGGCAGGTCTTGTTGTGGAGAACGAGGAGAGAGAGATTGTCGATTTGGCTAATGAAGGCTGCGAAATGAAAGTCACCGACAAAGTGGGGGATGAGGTTGACGTCGACTTGGCCAATGTAGCAGTAGAGGAGACCGTTGAGGATAGCGTGACATTGAAGACGGAAGATGGTGCAGAGAAGGAAAATGCAATAGGCTTGCCTGGCTCGGTGACGGAGGAGACAAATTTGGCTGGCCCATTGGTGGATGCGGCAGATGGGGTTAGCGGGAAAGTTGAAATTTTGGAGCTAAACGATAGAGTAGCGGAGAGGGAAGTGGCAGAAGAAACCAGTGCGGTTGACATGGCTGTGGAGACCAGTAAAGTGGAAGAGGAGGCAAATGGGGGTGCCATGATAGATAAGAATGAGGAGGCAGAGGAGAAAATAGTGCGGACGGAGACGGCAGACAGCTTGGATGTGGCTTGCACCAAGGATGATAGGACTGAAGCAGACGGAGCTGGCGTGGAGGATGAAATCAGGGACGCTGACAATAAGGTGGAGGTGATGGAGGAGGTTAACATGGTTGGCGCTGCGGAAGTTACAGCTTATACAGAAGAGGAGGCAGCTAGAGCTGACGCGAAGGAATATACCTTAGAGGCAGAGGTTGCAAATGAAGCTGATTTACTGGAAGAGGAAGCAGATGATGCTGACATGGCAGATTATACAGAGGCGGCTGAGAATGGAGAAGCGAAAGAGGTAGCAAATGAAACTGATTTGCCGGAAGAGGCAGAAAATACAGAGGTAGTTAGTGTAACTGATCCGAGGGAAGAGGAAGCAGATGATATAGTGACTGCTGAGGAGGCAGAGGAAATCGAGGTGGAGGAGCAAAGTGGAAGTATCAGCGGCGGGAAGAGGAAGCGTGGGAAGAGTTCCAAATCTACAGGGAGAGTTCCGGGTAGGAAAAAGGTGGAAGAGGATGTTTGCTTCATTTGCTTTGATGGGGGTGAGCTTTTTCTTTGCGACCGCAGGGGATGCCCAAAGGCTTACCATCCTTCTTGTGTTAATCGTGACGAGGCATTCTTTCGATCGAAGGGTAAATGGAATTGTGGTTGGCACCTTTGCAGCAAGTGTGAAAAGAATGCTTACTATATGTGCTATACATGTACCTTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTCATTTTATGTGTTAGGAGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTCATGTTGATTGAACAGAATGAGCAGGGAAACAAGGACGTGGGACAAGTGGATTTTGATGACAAAAACAGCTGGGAGTATCTTTTCAAGGACTACTACATGGATCTTAAACAGAGTCTGTCACTAACATATGATGAACTCACTCAAGCTAAAAACCCATGGAGGGGGTCTGATATGTTTTCTGCCAAACAAGAGTCACCTGATGAGCTTTATGATGCAAACAATGATAGAGCATCACACTCAGATAACTCTTCTGAGTATGTTGAATTGGGTAGCTCTAAAAGAAGAAAGCCTAAGAAACCGTTGAAGTCTTGTTCCAAAGAAGGGGACTCACATAGCACGTTGACAGGGGTTGCTGCCAAAGGGCCATCTGCAGATGATAGCTCTGAATGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGCAAAATGGAGACAAATATGTTTTGTCTCAGTTTGACGTGCAGGCTCTTTTGATAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCACCAAAAAAGTCAGATAATTTGTGATGCAAGGCTTCAAAATCTGTTTGGTAAACCTAGAGTTGGGCACTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTGAAAGAGGATTCCCAGGCTGAAAACCTGCAGGGGAGTGTAGTTGATACTGAAGTTAGTCATTTGGAAGGTGATGTCAACTCTGATTCCTATATGAAGGTAGGCAAAGAAAAGAGACGTAAAACAAGTAAAAAAGGTGGTGACAAAGGACCTCAATCTAATGTTGATGATTATGCAGCTATAGATCATCATAATATTAATTTAATTTATCTGAGACGTAATTTGGTGGAAGAACTACTTGAAGATACAGAGAAGTTTTATTATAAAGTGGTTGGATCATTTGTGAGAATAAGGATATCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCTGAGCCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATGTTATCTCAAATCAGGAGTTCACAGAGGACGAATGCAAGCGCCTCCGCCAGAGCATAAAGTGTGGGCTCATAAATCGGCTCACAGTGGGTGACATTCAGGACAAAGCAATGGCGCTTCAGGCAGTCAGAGTAAAAGATGGTTCTAGCACTGTATTCAAGGATGAAAGTTGTTATGTTGAGTGGGAAAGATTGAGGAACACCCTGAAAACTTCCCCTTTGCGCCGTTCTCCTCAACTAGAATGTGTTGAGAAATTGCAGCTTTTGAAAACACCAGAGGAACGTCAACGCAGATTAGACGAAATTCCGGAAATTCATGCAGACCCAAATATGGATCCAAGTTACGAGTCTGAAGATGATGATGAAATTGATGATAAGAGACAAGAAAACTACATGAGAGTTAGAGGTACAGCATTTGTTAGGAGGGATAGAGAAATGGTTTCTCCTAGAGGCAGTACTATTTCAAATGAGTCTTGGAGTAGAACAGGGAATTATCCTAACATAAATCGGGAATTAAGCAAGAATTTCTCTAATAAGGGATTCTCAATCAAAGATGATGATGCTTCTAATGCTGGTGAGTTATTTAATGATGACCATTTGCTCCAACGAAGGGATAGGGAAACACAGCTACCTAACAGCTGGGAGAGGCAAAAACCATCTTCAAGATTTGAGAGTGGTGCTAAAATTATGCAGCCTCTTACAACATCTGACTCTTTTTCTAGTACTGTGTCAGAAGCTTCTGTAGTACCATTTTCTACTGGAATAGAACCACCAGCTGTAAAAATAAATGAAACAGAAAAAATATGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCACGGTGCAATTACGTAAATGGAATAACACAGGATATTTTCCTGCTGATTTGAAAATTTGGAGAACCACTGAGAAGCAAGATGAGTCTATACTCTTAACAGATGCCTTAGCTGGAAAATTTAAGGAGACATCTGTGGTGGTTAAAACTCCAAAGGTTCAAATGCATAACTCAACTTCATATTCTGGGAAGCCTCATTTGCCTGCACTGAAAGGTATGGAAACTTTTCATATACATCCTCAAGCAACAGCAGGAGCCCCTGTCATGGTTGATGCTTCAAGAAATACAGATGTTGATATTAGAACTGTGGTTGCAAATGTGCAAAACCTGATTGTGAGTAGTCATAATTCTCACGCTGAAACTCAAGGGTGGGGATCTGGTTTGGTTCCAAAACCTGAAATGGCTGGCTTGGTTCAGTTACGTGGGGGTGATCTGCATGCCTGGGGAGGTGCTCTATCTCAGAGGGTAGAGTCAAATAATCCTGCTACTGTGCCTACTCAGCCACCTTCCTACGATTCATCTGTCTCATTTAGCACTGGAAATCCGACAGGGAATTTCCCCACACCAAGCTTTCCAGGCATGACTACACCTGAGCCTTGGAGGCCGCCAACTTCAAGTAGTCAATCAAACATTACACCTCCACCTCCACCTCCACCCAATATACCTGGCGGTATGCTTGTTGCAGAAAATCAAAATGCTGTTTGGGGGGTGATGCCAGGAAATCCGAACATAAGCTGGGGTGGAGCTCTACCTGCCAATATGAACATGAACTGGATGCCTGGGCAGGGGGCAGTACCTGGAAATACGAATCCAGGATGGGTTGCTTCTGTTCAGGGGCCCTCACCTGTAAATTCAGTTGGTTGGGCTGCGCCTGGTCAAGGTCATCCACAAGTTAATGCAAATTCAGGTTGGCCTGTGCCTGGTCAAGGGCTAGCTACTGGAAGTGCTAATCCTGGTTGGTCTGCTTCAGCTGAGAATCCAGGCATGTGGGGAAGTGAACAAAGTCATATGGGAGATAGGTTCCCCAACCAAGGGGATCATGGTCCTCATGGTGGAAGTAAATCATGGAACAGGCAGTCATCATTCAGTGGCGGAGGCAGAGAAGGAGTTGCTTTTAGACCTGCTTTTGGGGGACAAAGAGGAGTGTGTAGGTTCCATGAGAATGGACACTGCAAGAAGGGTGCTTCCTGTGATTTTCTGCACCCTTGA 4695 0.4496 MDAVEEYASAEPSIPLQLQHSSTAPDSPVHLLSTASQCQTKQQSLSIHEGEDELPSSAGPGFAEDLRDIAGEFEEAVDVEVEEKKHTVVDDVAGTTEVVVGTDVGEAVKERLVAEQAGLVVENEEREIVDLANEGCEMKVTDKVGDEVDVDLANVAVEETVEDSVTLKTEDGAEKENAIGLPGSVTEETNLAGPLVDAADGVSGKVEILELNDRVAEREVAEETSAVDMAVETSKVEEEANGGAMIDKNEEAEEKIVRTETADSLDVACTKDDRTEADGAGVEDEIRDADNKVEVMEEVNMVGAAEVTAYTEEEAARADAKEYTLEAEVANEADLLEEEADDADMADYTEAAENGEAKEVANETDLPEEAENTEVVSVTDPREEEADDIVTAEEAEEIEVEEQSGSISGGKRKRGKSSKSTGRVPGRKKVEEDVCFICFDGGELFLCDRRGCPKAYHPSCVNRDEAFFRSKGKWNCGWHLCSKCEKNAYYMCYTCTFSLCKGCIKDAVILCVRRNKGFCETCMRTVMLIEQNEQGNKDVGQVDFDDKNSWEYLFKDYYMDLKQSLSLTYDELTQAKNPWRGSDMFSAKQESPDELYDANNDRASHSDNSSEYVELGSSKRRKPKKPLKSCSKEGDSHSTLTGVAAKGPSADDSSEWASKELLEFVMHMQNGDKYVLSQFDVQALLIEYIKRNKLRDPHQKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAENLQGSVVDTEVSHLEGDVNSDSYMKVGKEKRRKTSKKGGDKGPQSNVDDYAAIDHHNINLIYLRRNLVEELLEDTEKFYYKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSIDVISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMALQAVRVKDGSSTVFKDESCYVEWERLRNTLKTSPLRRSPQLECVEKLQLLKTPEERQRRLDEIPEIHADPNMDPSYESEDDDEIDDKRQENYMRVRGTAFVRRDREMVSPRGSTISNESWSRTGNYPNINRELSKNFSNKGFSIKDDDASNAGELFNDDHLLQRRDRETQLPNSWERQKPSSRFESGAKIMQPLTTSDSFSSTVSEASVVPFSTGIEPPAVKINETEKIWHYQDPSGKVQGPFSTVQLRKWNNTGYFPADLKIWRTTEKQDESILLTDALAGKFKETSVVVKTPKVQMHNSTSYSGKPHLPALKGMETFHIHPQATAGAPVMVDASRNTDVDIRTVVANVQNLIVSSHNSHAETQGWGSGLVPKPEMAGLVQLRGGDLHAWGGALSQRVESNNPATVPTQPPSYDSSVSFSTGNPTGNFPTPSFPGMTTPEPWRPPTSSSQSNITPPPPPPPNIPGGMLVAENQNAVWGVMPGNPNISWGGALPANMNMNWMPGQGAVPGNTNPGWVASVQGPSPVNSVGWAAPGQGHPQVNANSGWPVPGQGLATGSANPGWSASAENPGMWGSEQSHMGDRFPNQGDHGPHGGSKSWNRQSSFSGGGREGVAFRPAFGGQRGVCRFHENGHCKKGASCDFLHP 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0155 1564 CDD SWIB-MDM2_like 656 731 - -
Glsi01g0155 1564 Pfam GYF domain 1149 1191 IPR003169 GO:0005515
Glsi01g0155 1564 ProSiteProfiles Plus3 domain profile. 792 925 IPR004343 GO:0003677
Glsi01g0155 1564 FunFam Zinc finger CCCH domain-containing protein 19 425 524 - -
Glsi01g0155 1564 ProSiteProfiles Zinc finger C3H1-type profile. 1539 1564 IPR000571 GO:0046872
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 386 401 - -
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 220 241 - -
Glsi01g0155 1564 ProSitePatterns Zinc finger PHD-type signature. 435 495 IPR019786 -
Glsi01g0155 1564 Gene3D SWIB/MDM2 domain 644 741 IPR036885 -
Glsi01g0155 1564 Gene3D - 794 922 IPR036128 GO:0003677
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 581 651 - -
Glsi01g0155 1564 Coils Coil 114 134 - -
Glsi01g0155 1564 FunFam Zinc finger CCCH domain-containing protein 19 1148 1205 - -
Glsi01g0155 1564 Pfam Plus-3 domain 797 900 IPR004343 GO:0003677
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 353 425 - -
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 1320 1353 - -
Glsi01g0155 1564 SUPERFAMILY FYVE/PHD zinc finger 431 485 IPR011011 -
Glsi01g0155 1564 CDD GYF 1146 1201 IPR003169 GO:0005515
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 1370 1385 - -
Glsi01g0155 1564 Gene3D - 1148 1206 IPR035445 -
Glsi01g0155 1564 SMART rtf1 792 902 IPR004343 GO:0003677
Glsi01g0155 1564 SMART swib_2 658 736 IPR019835 -
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 974 993 - -
Glsi01g0155 1564 SUPERFAMILY Plus3-like 793 922 IPR036128 GO:0003677
Glsi01g0155 1564 ProSiteProfiles GYF domain profile. 1146 1200 IPR003169 GO:0005515
Glsi01g0155 1564 FunFam Zinc finger CCCH domain-containing protein 19 793 922 - -
Glsi01g0155 1564 ProSiteProfiles Zinc finger PHD-type profile. 432 498 IPR019787 -
Glsi01g0155 1564 Pfam SWIB/MDM2 domain 658 731 IPR003121 -
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 762 788 - -
Glsi01g0155 1564 SMART PHD_3 434 480 IPR001965 -
Glsi01g0155 1564 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1368 1564 - -
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 974 1003 - -
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 14 45 - -
Glsi01g0155 1564 ProSiteProfiles SWIB/MDM2 domain profile. 650 733 IPR003121 -
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 1457 1492 - -
Glsi01g0155 1564 SUPERFAMILY GYF domain 1137 1199 IPR035445 -
Glsi01g0155 1564 CDD PHD5_NSD 434 479 - -
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 1446 1535 - -
Glsi01g0155 1564 SMART gyf_5 1147 1202 IPR003169 GO:0005515
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 1 60 - -
Glsi01g0155 1564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 423 526 IPR013083 -
Glsi01g0155 1564 MobiDBLite consensus disorder prediction 1320 1385 - -
Glsi01g0155 1564 SUPERFAMILY SWIB/MDM2 domain 656 732 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0155 Glsi-ChrGlsi01 1264247 1279376 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0155 432 519 PHD Transcription Factor Family AT5G36670 34.000 2.56e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Glsi01g0155 Plus-3 2.5e-22 No_clan