Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0152 ATGGATGTCGTGGAAGAGGATGCTTCGGCTAAACCTTCTTCTCCACTCCAACAACACTCCTCTGCCGCCCCTGATTCACCTGAACGCCTCTTAAGCACCGCTCCAAAATGCCACACCGACCGGCAAAATTTGACTCCTAATGAAGGAGGAGATGAGCCGCCATCGGTACCAGCCTTCGCTGAAGAATTCGGGGATATCACCGGCGAGTTTAGAGAGGACGTGGGTACGGGCCTAAGTTTGGAGAATAAGGATGAGGAGGAAGTTGTCGAAGGGAAGCCCAAGATTGTGGATGAAGTAGCAGGGACAAGGGACGTGGTTGTTGGAACCGATACGGATGAAGCGGTGAAGGAAACGCTAGTGGCTGAGGAGGCAGGGATTGTTGTTAAGAACGAAGGGAGAGAGATTACCGATTTGGCTAATGAGGGCTGCGAAATGAAAGTCACTGACAAAGAGGAGGGTAAGGTTGCCGCGGACTTGGCTAATGTAGGAGTGGAGGAGATAGTTGAGGATAGCGTGACATTGAAGGCGGAAGAGGGTGCAGAGAAGGAAAACGCGATAGGAATGTTTGGCCCAGTGACGGATGAGACGGAATTGGCTGACCCAATGATGGATGCGGCCGATGGGGTTGGCGTGGAAGATGAAAATTTGAAGGCTAACGATAGATTAGCGGAGAGGGAAGTAGCAGAGGAAGCCCATGTGGCTGTGGAGACCAGTAAGGTGGAAGAGGAGGTAGATGGGGGTGCCATGCTTGATAAGACCGAGGAGACAGAGGAGATAATATTGCGGACGGAGACGGAAGACAGTGTATATGTGGCTCGCACCATGGGTGAGACAACCGAAGCAGACGGAGCTGGCATGGAGGATGAAATCAAGGACGCTGACGATAAGGTGGACGTGGTAGAAGAGGTTAACATGGTTAGCGCTGTGGAAGCTACAGCTTACGCAGAAGAGGAGGCAAGTGGCGCAGACGCGAAGGAAAAGGCCTTAGAGGCAGAGGAGACAGATGTAGCAAATGAAGCTGATTTGGTGGAAGAGGAAGATGTTGCCGACATGGCAGAGAATACTGAGGCCGCTGAGGAAGCGGAAGAGAAAGAGGTAGCAAATGAAACTGATTTGCTGGACGAGGAAGCGGATGAAGCTCACATACTTCAGGATACAGAGGTTGCGGAGGAGGCAGAATATACAGAGGTACCTAATGAAGCTGATCTGATGGAAGAGGAAGCAGATTTTGCTGACATGGCAGGGGATACAGAGGCAGCTGAGCAGGCAGAGGAAATCGATGTGGAGGAGCAAAGTAGAAGTATCAACGGTGGGAAGAGGAGGCGTGGGAAGAGTTCCAAGTCTACAGGGAGAGTTCCGGGTAGGAAAAAGTTGGAAGAGGACGTTTGCTTCATTTGCTTCGATGGGGGCGAGCTTGTGCTTTGCGATCGCAGGGGATGTCCAAAGGCTTACCATCCTTCGTGTGTTAATCGTGATGAGGCATTCTTTCGAGCTAAGGGTAAATGGAATTGTGGTTGGCACCTTTGTAGCATCTGTGAGAAGAATGCTTACTATATGTGCTATACATGTACCTTCTCTTTATGCAAGGGATGCATCAAAGATGCTGTCATTTTATGTGTTAGGAGAAACAAGGGGTTTTGTGAGACATGCATGAGAACTGTTATGTTGATTGAACAGAATAAGCAGAGAAATGAGGGCATGGGACAAGTGGATTTTGATGACAAAAACAGCTGGGAGTATCTTTTCAAGGACTACTACTTAGATCTTAAACAGAGGCTATCACTATCATACGATGAACTCACTCAAGCTAAAAACCCATGGAAGGGATCTGATATGCTTTCTGCTAAACAGGAGTCACCTGATGAGCTTTATGATGCTAATAATGATGGAGAATCTCATTCAGATAGCTCTTCTGAGTATGTTGAAATGAGTAGTTCTAAAAGAAGAAAGGCCAAGAAACGGGTGAAGTCTCGTTCCAAAGAAGGGGGTTCACATAGCACAGTGACAATGATTGGTGCTGAAGGGCCATCTGCAGGCAGCCCTGAGTGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGCGAAATGGAGACAACTCTGTTTTGTCTCAGTTTGACGTGCAGGCTCTTTTGCTAGAGTATATAAAAAGAAATAAGCTTCGAGATCCTCGCAGAAAAAGTCAGATAATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTTGGGCATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCTTTCTAAAAGAGGATTCCCAGGCTGAGGATCTGCAGGGCAGTGTAGTTGATACTGAATTTAGTCATTTGGAAGGTGATGGCAACTCTGATTCCTATATGAAGGCAGGCAAAGATAAGAGACGTAAAACACGTAAAAAGGGTGGTGACAGAGGATCTCAATCTAATGTTGATGATTATGCAGCCATTGATCATCATAATATTAATTTAATTTATCTCAGACGTAATTTGATGGAAGAACTACTCGAAGATACAGAAAAGTTTTATGATAAAGTTGTTGGATCATTTGTGAGAATAAGGATTTCTGGCAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTCGTAGGTACATGCAAAGCAGCTGAGCCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAAGAGTTTACAGAGGGTGACATTCAGGACAAAGCAACGGTGCTTCAGGCAGTCAGAGTAAAAGATGATCCCCATCATTTGGTCTTCTCAATTGATGCTTCAGTGAGCTCCAGTAGTTTGCTTTTGGGGGGAAGGGGGGTTGAGCAAGGGATTGCATTTGGGATGAGAGGCTGTGATCTGTCCTTAACCTTGTGTAATACTCATATGATGTTTATTCTGTCAAGGCCTAGCAACACTCTTCAGGAAATTCTTCTTCATGATATAATCTCAATAGAATGTGTTGAGAAATTGCAGCTTTTGAAAACACCAGAGGAACGTCAACGGAGGTTAGATGAAATTCCCGAAATTCATGCAGACCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGAGATGGATGATAAAAGACAAGAAAACTACATGAGACCTAGAGGTACTGCATTTGCTAGGAGGGGTAGAGAAATGGTTTCTCCTGGAAGAGGTGGTTCAATGTCAATTGATTCTTGGAGTGGAACAAGGAATTATCCTAACATAAATCAGGAGCTAAGCAGGAATTTGTCTAATAAGGGATTCTCAATCAAAGGCGATGATGCTTCTACTGCTAGTGAGTTATTCAATGATGATCGTTTGCCCCAGGGAAGGGATAGGGAAACACAGCTACCTAACAGCTGGGAGAGGCCAAAACAATCTTCAAGCTTCGACAGTGGTGCTAAAAATATGCAGCCTTTAACAACACATGACTCTTTTTCTACTGCTGCATCAGAAGCTTCTGCGGCAGCATCTTCTACTGGAATAGCAACACCAGCTGTAAAACTAAATGAAACAGAGAAGATATGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAGTTACGTAAATGGAATAACACAGGATATTTTCCTGCTGATTTGAAAATTTGGAGAGCCACTGAGAAGCAAGATGAATCTATACTTTTAACAGATGCCTTAGCTGGAAAAATTTCTAAGGAGACATCAGTGGTGGATAAAACTTTTCCAAAGGTTCAAATGGTGCATGATTTGCATAGCTCATCCTCATATTCTGGGAAGCCTCATTTGCCTGCACAACAAGGTATAGAAGGTCAAGTTGGAGGAAGACCATTATTTGATCAAAATAGTGGATCTTGGAATTCACGAAGTACACTGGGTTCTTCAGGCCAAACTACTGGAGATAGTTGGAGACATAAGGATAATATTAATTTGAGTAGGCCTTCTCCATTGACAGTTGATGTCCCAAATACTCCTGCAAATGGATGGAGTTCTGATGCTGTTATTAGAAATGAATCAACGAATCTTCCTTCACCTACTCCCCAGACTACATCAGGTGCTACTATGGAGCAAAATTTTGAAAATAAATGGTCGCCTACTCCCATCCAGCCAGCTGGTTCTATTGTTGGAAATCCATTTTCAGCAGGTCATGGAGGCTTGCAGGCCCCTGGGGTCGTGATCCCAGAGAATGTGATGCAAATTGCACAAAACGGTTCAGGTTCACAAGCTGGTATGACTTCGGTGCCGAAACTTGAGAAGAGTACGATTTTGAACTCTACTGAAACTGCTCAAATACATCCTCAAGCAACAGCAGGAGCACGTGTCATGGCTGATGCTTCAAGAAATACGGGCGTTGACATTAAAACTATGGGTGCAAATGTGCAAAACCTGATTGTGAGTAGCCATAATTCTCATGCTGAAACACAAGCGTGGGGATCTGGTTTGGTTCCAAAACCAGAAATGCCTGGCTCAATTCAGTTACGAGGCAGTGAACCGCAGGCCTGGGGAGGTGCTCCATCTCAGAGGGTAGAGTCAAATAATCCTGCTGCAATGCCTGCCCAGCCAGCTCCCCATAATCATTCATCTGTCTCATTTAGCACTGGAAATCCAACAGGGAATTTCCCCATGTCAAACTTTCCTGGCATGACTACACCTGAGCCTTGGAGACCTCCTTCATCAAATAATCAATCAAACATTACACCTCCGGCTCCACCCAATATACCGTGGGGAATGGTTACTGCAGAAAATCAAAATGCTGGTTGGGGGGTGATGCCAGGAAATCCGAGTATGAGCTGGGGTGGACCTCAGCCTGCCAATATAAACATGAACTGGATGCCTGGGCAGGGCCCAGTACCTGGAAATCCAAATCCAGGATGGGTTCCTCCTATTCAGGGGCCCTCACCAGTAAATTCAGTTGGTTGGGTTGCGCCTGGTCAAGGACATCCACAAGTTAATCCAAATTCAGGTTGGCCAATGCCTGGTCAAGGCCAAGCACCTGGAAGTGCTAATCCTGGTTGGGCTGCATCAACTGGGAATCCAGGCATGTGGGGTAGCGAACAAAGTCATATTGGAGATAGGTTCCCAAACCAAGGGGATCGTGGTCCTCATGGTGGAGATTCTGGTTATGGTGGAGGTAAACCATGGAAGAGGCAGTCATCGTTTAGCAGTGGAGGCAGAGAAGGAGGTTCTTCGAGACCTCCTTTTGGGGGACAAAGAGGAGTGTGCAAGTTCCATGAGAGTGGACACTGCAAGAAGGGAGCTTCCTGTGATTATCTGCACACTTGA 5328 0.454 MDVVEEDASAKPSSPLQQHSSAAPDSPERLLSTAPKCHTDRQNLTPNEGGDEPPSVPAFAEEFGDITGEFREDVGTGLSLENKDEEEVVEGKPKIVDEVAGTRDVVVGTDTDEAVKETLVAEEAGIVVKNEGREITDLANEGCEMKVTDKEEGKVAADLANVGVEEIVEDSVTLKAEEGAEKENAIGMFGPVTDETELADPMMDAADGVGVEDENLKANDRLAEREVAEEAHVAVETSKVEEEVDGGAMLDKTEETEEIILRTETEDSVYVARTMGETTEADGAGMEDEIKDADDKVDVVEEVNMVSAVEATAYAEEEASGADAKEKALEAEETDVANEADLVEEEDVADMAENTEAAEEAEEKEVANETDLLDEEADEAHILQDTEVAEEAEYTEVPNEADLMEEEADFADMAGDTEAAEQAEEIDVEEQSRSINGGKRRRGKSSKSTGRVPGRKKLEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSICEKNAYYMCYTCTFSLCKGCIKDAVILCVRRNKGFCETCMRTVMLIEQNKQRNEGMGQVDFDDKNSWEYLFKDYYLDLKQRLSLSYDELTQAKNPWKGSDMLSAKQESPDELYDANNDGESHSDSSSEYVEMSSSKRRKAKKRVKSRSKEGGSHSTVTMIGAEGPSAGSPEWASKELLEFVMHMRNGDNSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFFLKEDSQAEDLQGSVVDTEFSHLEGDGNSDSYMKAGKDKRRKTRKKGGDRGSQSNVDDYAAIDHHNINLIYLRRNLMEELLEDTEKFYDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEGDIQDKATVLQAVRVKDDPHHLVFSIDASVSSSSLLLGGRGVEQGIAFGMRGCDLSLTLCNTHMMFILSRPSNTLQEILLHDIISIECVEKLQLLKTPEERQRRLDEIPEIHADPNMDPSYESEEDEMDDKRQENYMRPRGTAFARRGREMVSPGRGGSMSIDSWSGTRNYPNINQELSRNLSNKGFSIKGDDASTASELFNDDRLPQGRDRETQLPNSWERPKQSSSFDSGAKNMQPLTTHDSFSTAASEASAAASSTGIATPAVKLNETEKIWHYQDPSGKVQGPFSMVQLRKWNNTGYFPADLKIWRATEKQDESILLTDALAGKISKETSVVDKTFPKVQMVHDLHSSSSYSGKPHLPAQQGIEGQVGGRPLFDQNSGSWNSRSTLGSSGQTTGDSWRHKDNINLSRPSPLTVDVPNTPANGWSSDAVIRNESTNLPSPTPQTTSGATMEQNFENKWSPTPIQPAGSIVGNPFSAGHGGLQAPGVVIPENVMQIAQNGSGSQAGMTSVPKLEKSTILNSTETAQIHPQATAGARVMADASRNTGVDIKTMGANVQNLIVSSHNSHAETQAWGSGLVPKPEMPGSIQLRGSEPQAWGGAPSQRVESNNPAAMPAQPAPHNHSSVSFSTGNPTGNFPMSNFPGMTTPEPWRPPSSNNQSNITPPAPPNIPWGMVTAENQNAGWGVMPGNPSMSWGGPQPANINMNWMPGQGPVPGNPNPGWVPPIQGPSPVNSVGWVAPGQGHPQVNPNSGWPMPGQGQAPGSANPGWAASTGNPGMWGSEQSHIGDRFPNQGDRGPHGGDSGYGGGKPWKRQSSFSSGGREGGSSRPPFGGQRGVCKFHESGHCKKGASCDYLHT 1775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0152 1775 Pfam Plus-3 domain 824 921 IPR004343 GO:0003677
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 317 342 - -
Glsi01g0152 1775 ProSitePatterns Zinc finger PHD-type signature. 463 523 IPR019786 -
Glsi01g0152 1775 Gene3D - 821 939 IPR036128 GO:0003677
Glsi01g0152 1775 Coils Coil 359 379 - -
Glsi01g0152 1775 CDD Bbox1 508 534 - -
Glsi01g0152 1775 SMART PHD_3 462 508 IPR001965 -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1683 1698 - -
Glsi01g0152 1775 FunFam Zinc finger CCCH domain-containing protein 19 453 552 - -
Glsi01g0152 1775 CDD SWIB-MDM2_like 683 758 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1106 1168 - -
Glsi01g0152 1775 ProSiteProfiles Zinc finger PHD-type profile. 460 526 IPR019787 -
Glsi01g0152 1775 SMART gyf_5 1190 1245 IPR003169 GO:0005515
Glsi01g0152 1775 SUPERFAMILY Plus3-like 820 921 IPR036128 GO:0003677
Glsi01g0152 1775 Gene3D - 1191 1247 IPR035445 -
Glsi01g0152 1775 ProSiteProfiles Plus3 domain profile. 819 952 IPR004343 GO:0003677
Glsi01g0152 1775 SUPERFAMILY FYVE/PHD zinc finger 459 513 IPR011011 -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1660 1775 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1 68 - -
Glsi01g0152 1775 ProSiteProfiles GYF domain profile. 1189 1243 IPR003169 GO:0005515
Glsi01g0152 1775 CDD GYF 1189 1244 IPR003169 GO:0005515
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 618 679 - -
Glsi01g0152 1775 ProSiteProfiles SWIB/MDM2 domain profile. 677 760 IPR003121 -
Glsi01g0152 1775 CDD PHD5_NSD 462 507 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1136 1168 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1507 1545 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1293 1346 - -
Glsi01g0152 1775 FunFam Zinc finger CCCH domain-containing protein 19 671 765 - -
Glsi01g0152 1775 ProSiteProfiles Zinc finger C3H1-type profile. 1750 1775 IPR000571 GO:0046872
Glsi01g0152 1775 Gene3D SWIB/MDM2 domain 676 768 IPR036885 -
Glsi01g0152 1775 SMART swib_2 678 763 IPR019835 -
Glsi01g0152 1775 Pfam SWIB/MDM2 domain 685 758 IPR003121 -
Glsi01g0152 1775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 554 IPR013083 -
Glsi01g0152 1775 Pfam GYF domain 1192 1234 IPR003169 GO:0005515
Glsi01g0152 1775 SUPERFAMILY GYF domain 1179 1242 IPR035445 -
Glsi01g0152 1775 FunFam Zinc finger CCCH domain-containing protein 19 1191 1248 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 784 814 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1758 1775 - -
Glsi01g0152 1775 SUPERFAMILY SWIB/MDM2 domain 681 759 IPR036885 -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1028 1049 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1121 1135 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1067 1087 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 319 334 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 11 27 - -
Glsi01g0152 1775 PANTHER UNCHARACTERIZED 342 1775 - -
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 417 453 - -
Glsi01g0152 1775 SMART rtf1 819 928 IPR004343 GO:0003677
Glsi01g0152 1775 MobiDBLite consensus disorder prediction 1267 1346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0152 Glsi-ChrGlsi01 1231176 1252394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0152 460 547 PHD Transcription Factor Family AT5G36670 31.000 9.93e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Glsi01g0152 Plus-3 1.8e-19 No_clan