Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0134 ATGGGTTTCCACTTACCTGGTATTAGAAGGGCATCTTTTTCTGCAACCCCATCTGCTTCGAAGGAAGTAGCAGTTCCAAAGGGCTACCTTGCAGTTTATGTTGGAGAGAAAATGAAGCGCTTCATTATTCCTGTATCATACTTGAATCAACCTTCATTCCAAGAGTTATTGAGTCAAGCTGAAGAAGAATTCGGCTATGATCATCCAATGGGTGGTCTTACAATTCCTTGCAAAGAAGATGCATTTGTAGAACTCACTTCTCGCTTGAATGGGTTATTCCGTTTCGATTTCTCAGACGAACTTATGATTGATATGACCAACAGCTCATCTTCGAAAAAACACGGTCAACAAGATCAGCCTGAATTAAGTGGTCCCACTCCCAAATCACAGCGAACTAAAATGGGCAAATCCGAAGACAATGAGAAAAAGAACTTGGGTAAGAAACTCAAAGATGTTGAAATAAGCGTTCCAATAGTGTATGGTAACACTGCATTCTGGCTTGGCAAAAAGGCAAGCGAGTATCAGTCGCATAAATGGACTGTGTATGTTCGAGGAGCAACCAATGAGGACCTTGGGGTGATTATTAAGCGTGCTGTTTTTCAGTTGCATTCTAGTTTCAATAATCCGACAAGGGTTGTGGAATCACCGCCTTTTGAGTTGTCTGAAGCAGGATGGGGTGAATTTGAAGTTGCCATCACACTTTATTTCCACAGTGATGTTTGTGACAAGCCTTTGAACTTATATCATCACTTGAAGTTGTATCCAGAGGATGAAAACAGTACCATGTCCATAAAAAAGCCTGTTGTTGTGGAATCATATGACGAGATAGTTTTCCCTGATCCTTCTGAAGCTTTTTTAGCTCGTTTGCAAAATCATCCAGTAGTGAACTTGCCAAGATTGCCTGCTGGGATAACCTTGCCTCCTCCTATACCTGTTGAGGATGCAAGTAAAAGGAGGAGAGGTGATACTAAAGATCATCCCCTAAGCCAATGGTTCATGAATTTCTCTGAAGCAGATGAGCTCTTACAGCTTGCAGCAGCTCGTCAGCAGGTTCAAGCTCATATTGCTAAACTCAGACGACAGATAAGTTTAATAGATGGGCAGCAGCACCAGCAGTTCAAATCTTCTTCTGACCAATAG 1140 0.4193 MGFHLPGIRRASFSATPSASKEVAVPKGYLAVYVGEKMKRFIIPVSYLNQPSFQELLSQAEEEFGYDHPMGGLTIPCKEDAFVELTSRLNGLFRFDFSDELMIDMTNSSSSKKHGQQDQPELSGPTPKSQRTKMGKSEDNEKKNLGKKLKDVEISVPIVYGNTAFWLGKKASEYQSHKWTVYVRGATNEDLGVIIKRAVFQLHSSFNNPTRVVESPPFELSEAGWGEFEVAITLYFHSDVCDKPLNLYHHLKLYPEDENSTMSIKKPVVVESYDEIVFPDPSEAFLARLQNHPVVNLPRLPAGITLPPPIPVEDASKRRRGDTKDHPLSQWFMNFSEADELLQLAAARQQVQAHIAKLRRQISLIDGQQHQQFKSSSDQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0134 379 Pfam YEATS family 176 255 IPR005033 GO:0006355
Glsi01g0134 379 ProSiteProfiles YEATS domain profile. 148 292 IPR005033 GO:0006355
Glsi01g0134 379 MobiDBLite consensus disorder prediction 132 146 - -
Glsi01g0134 379 Coils Coil 341 361 - -
Glsi01g0134 379 MobiDBLite consensus disorder prediction 107 131 - -
Glsi01g0134 379 CDD YEATS_TFIID14_like 154 285 - -
Glsi01g0134 379 PANTHER PROTEIN AF-9 HOMOLOG 144 375 IPR005033 GO:0006355
Glsi01g0134 379 FunFam Transcription initiation factor TFIID subunit 14 149 302 - -
Glsi01g0134 379 Gene3D YEATS domain 149 301 IPR038704 -
Glsi01g0134 379 MobiDBLite consensus disorder prediction 107 146 - -
Glsi01g0134 379 Pfam Auxin responsive protein 13 88 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0134 Glsi-ChrGlsi01 1091436 1099033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0134 25 82 Calmodulin-binding Proteins AT3G43120 58.621 3.29e-17 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0134 01 1091436 1099033 Glsi01g0134 01 1091436 1099033 ECH