Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi01g0124 | ATGGAAGTTAGCCTCTCTCCCAAACCCAATCATCATACCCTGAGCTTCACCTCATGCAATTCTCGCTCTCCCTTTGCTTTTTCCCTCTCCAATCTCCAATTCATCCGAACACGGTTCCTTGGTTCTTCTCACAATCTCAGGCCTCCCGGATGTGTTCGCTCTAGAAGTAAATGCAAGAAGTTACAGCTTCTTCACCTCCATTCCCCTCGCTTGGTCTTCAAAGCCTCTTTGAATTCTCACCCCATTATCATCGTCGTCACCTTAGTTACTTTATCTGCGGTTACTCTGTTCTACTTCAGTCGCAGTAAGAGAAAGAAGAATTCCAAAGAGATACTGGGACGCCCAACTTTTGCATTATCACAACAAGGAAGTGGTATTGGGAACCAGGCCATCGAAAGCCAGATTCTTTGCTTTCAGGAATTTCAAAGTGAAAACTTATTGAAAGAAATTGGGATATTGGACCATAAGTCTGGAGAAGACAACCATGTTTTGGAGGGAAAAGAGGCCCAGCTACCATATTGGAGATCTTCTACGGTGCAAGAAGAGGCCATCATGACCAAGAAATTAGAGTCATCTTCTGATGTTCTTGTCTCTAGTGTCAACAATGCTTCATCTTCAAACAGTTCCAAGGTTGTAGATCAATCTTGTTTGTCCATGGACTTTCGATCAAGTTCATTAGAACCTCTATCTTTTGCTGCAGAAATGATTGAATTACAAGTGCAAGAAACTCAAGATAAAGCTGACTTTGATTCTGAGGTTCCTACAATTATGGATAAATCTGAGCATACTGCTTCTTTTGATTGTGTAAACAATGCTCTCACAATAGTGAAAGAACATGCTAAAGAAAAAATTGAACTTGGTACCATCAGCAATGATGTCCTTACTGGTGAATCAGTTAGGCAAGAACTTTACATGTTTTATCAGGTCAACAAGTCTGCAGCAGGATCCTTGTCACCACTGAGTAGTTTAAAATCATCATCTTCTCATGCTTCTTTCATGAAGAAAAATGAATTATACTCCTCAATGGGGAATACCACTCTAAAAGGACCAGAATTATTTACAGAGATTTCTCTGCAAAATGCAGAGAATGTTGAAGGAGTGGAACCAAGAGCCAGTTACAAAGAAGGTTACACCCAGCAAAATGGAATTAAGTACTTGAGGAAAGGCAGCAGATCTCTGAGAGACAGGGAGAAAAACAATCTGGATCAGAAAAGTAACACAGTTTTTCCCCAGATTTCCCATTCAATCAGGGTTCATGTTGATCACAAAAATCATCGTTCTGAACATTTAAGCACATATAATTGTTTGCTAAAAGATGGGAGGTTACATGAATGTGTGGAATTGCTTAAAGATATGGAAATGAAAGGTTTCTTAGATATGAATAAGGTTTATCATGCAAAATTTTTTGACATCTGCAAGAGACAAAAGGCTGTCCGAGAAGCTTTTGATTACACTAAACTTATTCCAAATCCAAAATTGAGTACTTTTAATATGCTTATGTCTGTGTGTACAAGCTCTCAAGATTCAGAAGGGGCTTTCCAAGTTCTGAAGCTTGTTCAGGAGGCTGGATTCAAACCTGATTGTAAACTTTATACCACTCTGATATCAACATGTGCTAAGAGTGGCAAAGTTGATCAAATGTTCGAAGTATTTCACAATATGGTTAATTCTGGAGTAGAACCTAATGTTAATACCTATGGCGCACTAATTGATGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAAGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATTGCTGCATGTGCTCAGTCAGGAGCAGTAGATCGAGCTTTTGATGTTTTAGCAGAAATGGCAGCTGAAATGCAGCCTATTGACCCAGATCACATAACTATTGGTGCATTGATGAAGGCATGCACAAATGCTGGCCAGGTTGAACGAGCACGGGAAATGTATAATATGATACATCAATATAGTATAAAGGGAACTCCAGAGGTCTACACTATTGCCATTAATTCTTGCAGCCGAACTGGAGATTGGGAATTTGCATGCAGTGTATACAGCGACATGACCAGGAAAGGGATTCTCCCTGATGAGATGTTTCTGAGTGCACTAATAGATGTTGCTGGACATGCTGGAAAGCTGGATGCTGCCTTTGAAGTCCTACAAGAAGCCCGTAACCAAGGAATACATATTGGAATAATGTCATATAGCTCACTGATGGGAGCCTGTAGCAATGCTGGAAATTGGCAGAAAGCATTGAAGCTATACGAAGATCTTAAGTCTTTTAAATTGGTGCACACTGTTTCAACCGTGAATGCTTTGATCACTGCACTGTGTGATGGAGATCAATTTCAGAGAGCTATGGAGGTTTTGTCTGAAATGAAAGGATTAGGTCTGCGCCCAAACAGTATCACATACTCAATCCTTATAGTGGCAAGTGAGAAAAAGGATGATCTGGAAGCAGGTCAAATGCTCCTTTCTCAAGCCAAAATGGATGGTGTTTCCCCTAATCTTGTCATGTGTAGATGCATAATCGGGATGTGCTTGCGGAGATTTGAGAGGGCTTGCATTATTGGTGAACCTGTTTTATCTTTTGACTCAGGATGGCCCCAAGTTAATAATAAATGGACATTGCTGGCCTTAATGGTGTATCGTGAAATGATTGGAGGGGGTGAAATGCCTACTAGTGAGGTTCTGTCACTAATTCTTGGATGCCTGCAACTCCCTTATGACGCATCTTTGAAAAATAGACTTATTGAGAGCCTAGGAGTAAGTGCTGAAACTTCAAGAAGCTCAAACCTCTGTTCATTAATACATGGATTTGGTGAATATGATCCTCGTGCTTTTTCACTACTTGAGGAAGCTGCTTCACTTGGAATTGTTCCATCTGTATCTAATAAAGAGAGTCCTATTGTTGTGGATGCAAAGGAATTTCATGCTTTTACTGCTGAGGTATACCTCATAACTGTTTTGAAAGGTCTCAAGCATCGGCTTGCAGCAGGTGCAAGGTTACCCAATATAATCATCTTATTGCCTATAGAGAAAACAAAAGTTGCATCTCTCAAGGGCGAAAAATGTATTAACCTTTCAGCAAGGGTTGGCCAAGCAGTTGCAGCGCTATTGAGAAGGCTTAGAATACCTTACCAGGGTAGTGAATCATATGGAAAGATCAGAATTAATGGAATAACTTTGAAAAAATGGCTTCAACCAAAACTTGCATCTCCTTTCAGTGAAAACCAAGGTGGCTTTAGCTTATCCCAGTCACGACTGGGCAAAAGTATCAGTCATCAACAACGAAACATTCGAATTGGCAATCTGTCTTTGGATTAA | 3351 | 0.4032 | MEVSLSPKPNHHTLSFTSCNSRSPFAFSLSNLQFIRTRFLGSSHNLRPPGCVRSRSKCKKLQLLHLHSPRLVFKASLNSHPIIIVVTLVTLSAVTLFYFSRSKRKKNSKEILGRPTFALSQQGSGIGNQAIESQILCFQEFQSENLLKEIGILDHKSGEDNHVLEGKEAQLPYWRSSTVQEEAIMTKKLESSSDVLVSSVNNASSSNSSKVVDQSCLSMDFRSSSLEPLSFAAEMIELQVQETQDKADFDSEVPTIMDKSEHTASFDCVNNALTIVKEHAKEKIELGTISNDVLTGESVRQELYMFYQVNKSAAGSLSPLSSLKSSSSHASFMKKNELYSSMGNTTLKGPELFTEISLQNAENVEGVEPRASYKEGYTQQNGIKYLRKGSRSLRDREKNNLDQKSNTVFPQISHSIRVHVDHKNHRSEHLSTYNCLLKDGRLHECVELLKDMEMKGFLDMNKVYHAKFFDICKRQKAVREAFDYTKLIPNPKLSTFNMLMSVCTSSQDSEGAFQVLKLVQEAGFKPDCKLYTTLISTCAKSGKVDQMFEVFHNMVNSGVEPNVNTYGALIDGCARAGQVAKAFGAYGIMRSKKVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAEMQPIDPDHITIGALMKACTNAGQVERAREMYNMIHQYSIKGTPEVYTIAINSCSRTGDWEFACSVYSDMTRKGILPDEMFLSALIDVAGHAGKLDAAFEVLQEARNQGIHIGIMSYSSLMGACSNAGNWQKALKLYEDLKSFKLVHTVSTVNALITALCDGDQFQRAMEVLSEMKGLGLRPNSITYSILIVASEKKDDLEAGQMLLSQAKMDGVSPNLVMCRCIIGMCLRRFERACIIGEPVLSFDSGWPQVNNKWTLLALMVYREMIGGGEMPTSEVLSLILGCLQLPYDASLKNRLIESLGVSAETSRSSNLCSLIHGFGEYDPRAFSLLEEAASLGIVPSVSNKESPIVVDAKEFHAFTAEVYLITVLKGLKHRLAAGARLPNIIILLPIEKTKVASLKGEKCINLSARVGQAVAALLRRLRIPYQGSESYGKIRINGITLKKWLQPKLASPFSENQGGFSLSQSRLGKSISHQQRNIRIGNLSLD | 1116 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi01g0124 | 1116 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 | 627 | 718 | - | - | |
| Glsi01g0124 | 1116 | Gene3D | Tetratricopeptide repeat domain | 630 | 739 | IPR011990 | GO:0005515 | |
| Glsi01g0124 | 1116 | FunFam | Pentatricopeptide repeat-containing protein MRL1 chloroplastic | 719 | 866 | - | - | |
| Glsi01g0124 | 1116 | Pfam | PPR repeat | 434 | 457 | IPR002885 | - | |
| Glsi01g0124 | 1116 | NCBIfam | pentatricopeptide repeat | 742 | 772 | IPR002885 | - | |
| Glsi01g0124 | 1116 | NCBIfam | pentatricopeptide repeat | 495 | 528 | IPR002885 | - | |
| Glsi01g0124 | 1116 | NCBIfam | pentatricopeptide repeat | 565 | 597 | IPR002885 | - | |
| Glsi01g0124 | 1116 | NCBIfam | pentatricopeptide repeat | 777 | 809 | IPR002885 | - | |
| Glsi01g0124 | 1116 | NCBIfam | pentatricopeptide repeat | 530 | 563 | IPR002885 | - | |
| Glsi01g0124 | 1116 | NCBIfam | pentatricopeptide repeat | 672 | 705 | IPR002885 | - | |
| Glsi01g0124 | 1116 | Gene3D | Tetratricopeptide repeat domain | 741 | 864 | IPR011990 | GO:0005515 | |
| Glsi01g0124 | 1116 | Pfam | Pentatricopeptide repeat domain | 797 | 855 | IPR002885 | - | |
| Glsi01g0124 | 1116 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 597 | 627 | IPR002885 | - | |
| Glsi01g0124 | 1116 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 492 | 526 | IPR002885 | - | |
| Glsi01g0124 | 1116 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 669 | 703 | IPR002885 | - | |
| Glsi01g0124 | 1116 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic | 441 | 572 | - | - | |
| Glsi01g0124 | 1116 | Pfam | Pentacotripeptide-repeat region of PRORP | 494 | 630 | IPR033443 | - | |
| Glsi01g0124 | 1116 | Pfam | Pentacotripeptide-repeat region of PRORP | 642 | 783 | IPR033443 | - | |
| Glsi01g0124 | 1116 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 562 | 596 | IPR002885 | - | |
| Glsi01g0124 | 1116 | Gene3D | Tetratricopeptide repeat domain | 434 | 629 | IPR011990 | GO:0005515 | |
| Glsi01g0124 | 1116 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 527 | 561 | IPR002885 | - | |
| Glsi01g0124 | 1116 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC | 12 | 1115 | - | - | |
| Glsi01g0124 | 1116 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 774 | 808 | IPR002885 | - | |
| Glsi01g0124 | 1116 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 739 | 773 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi01g0124 | 429 | 858 | Glycosyltransferase | AT1G05670 | 23.529 | 4.24e-30 | 126 |