Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0112 ATGGATGTGAGATTAGTTCGTGATGGATTCTATCGTAATTCCTTCCAAAGGACTGAAGTTGAACCAATGGATTGTACAGCTGCAAGAAAAGTTCAAAAGGCTGACAGAGAAAAATTAAGGAGGGATCGGCTCAATGAGCAGTTTGTAGAACTGGGTAACATTTTGGACCCTGATAGGCCAAAAAATGACAAGGCAACAATTATAGCTGATACGATTCAATTGCTGAAGAACCTTACCTCTCAAGTTAGTACACTCAAAGATGAATATGCTATGCTAACTCAAGAGTTCCATGAGGAGAAGAATGATATCAGAGAAGAGAAAGCTTCTCTTAAATCAGATATTGAGAACCTGAATAATCAGTATCCGCAGCGACTTGGAAGTATGTTCCCTTGGACTGCAATGGATCACTCGGTTATGATGGCTCCACCTTCGTATCCATATTCAGTGCCAGTGCCATTGCCAGTCCCTCCTGGTCCAATTCCCATGCATCCTGCCATGCAGCCATACCCCTTCTTTGCAAATCAAAATCCTGGGTTCATTCCTAACCCCATTGTTCCTTATTTAGTCCCTAATACCCTTGTTGAGCAGCAATCCACTCAATATGTATGCTCACCGCTTCATTCAGGTAGTCAGTCCCACGTATCAGGAAAACAAGATACCAAAAACAAATCATCCAGGGAGAGCAAGGTTGAAAATAGTGAGGGTCCTAATGATGTCACTACGGCAGATCAGGAATTATCATCTGGACGAAGAAAATCCTGCAAGTTGTCTGTGAAGGAAAGCAGTTACCCAGAAGGGAGCTCGTCAGCTGCTCTAAAGTTTTCCCTTGTGCCTTTCTTATATAAAGGCTGCAATATCTTTAAGGCCCTTCGCCTCATTCTTCTTGTAAGTAAAACCGTCGAAGTCCCGCTCGCCACCAACTACAAAAGTCCAGGAAGCTAA 942 0.431 MDVRLVRDGFYRNSFQRTEVEPMDCTAARKVQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATIIADTIQLLKNLTSQVSTLKDEYAMLTQEFHEEKNDIREEKASLKSDIENLNNQYPQRLGSMFPWTAMDHSVMMAPPSYPYSVPVPLPVPPGPIPMHPAMQPYPFFANQNPGFIPNPIVPYLVPNTLVEQQSTQYVCSPLHSGSQSHVSGKQDTKNKSSRESKVENSEGPNDVTTADQELSSGRRKSCKLSVKESSYPEGSSSAALKFSLVPFLYKGCNIFKALRLILLVSKTVEVPLATNYKSPGS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0112 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 96 IPR036638 GO:0046983
Glsi01g0112 313 Gene3D - 24 89 IPR036638 GO:0046983
Glsi01g0112 313 MobiDBLite consensus disorder prediction 205 266 - -
Glsi01g0112 313 PANTHER TRANSCRIPTION FACTOR BHLH121 13 268 IPR044579 GO:0003700|GO:0006879
Glsi01g0112 313 Coils Coil 27 47 - -
Glsi01g0112 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Glsi01g0112 313 Coils Coil 68 120 - -
Glsi01g0112 313 CDD bHLH_AtILR3_like 33 104 - -
Glsi01g0112 313 Pfam Helix-loop-helix DNA-binding domain 29 78 IPR011598 GO:0046983
Glsi01g0112 313 SMART finulus 34 84 IPR011598 GO:0046983
Glsi01g0112 313 MobiDBLite consensus disorder prediction 219 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0112 Glsi-ChrGlsi01 946052 951222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0112 19 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 58.261 3.29e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi01g0112 HLH 1e-07 No_clan