Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0108 ATGGCTGCAAACCCTAAGGTCTTCTTCGATATGACCATCGGAGGCCAACCTGCTGGTCGCATCGTTATGGAGCTTTACGCTGACACCACCCCAAGGACAGCTGAGAACTTCCGTGCTCTCTGCACCGGTGAGAAGGGAGCCGGTCGCAGCGGCAAACCACTTCATTACAGGGGCTCCTCCTTCCACCGTGTGATCCCTAACTTCATGTGCCAGGGAGGCGATTTTACTGCCGGAAATGGCACTGGCGGCGAGTCGATCTACGGCTCTAAGTTCGCCGATGAAAACTTCATCAGGAAGCATACAGGTCCCGGTATCCTGTCCATGGCGAATGCCGGCCCTGGAACCAACGGATCTCAGTTCTTCATCTGCACCTCCAAGACCGAGTGGCTGGATGGCAAGCACGTGGTGTTTGGCCAGGTCGTGGAGGGCATGAATGTGGTGAAGGAGATCGAGAAGGTTGGGTCAAGCTCCGGCAAGACCTCGAGGCCGGTGGTGGTCGCCGACTGTGGTCAACTCTCTTAG 522 0.569 MAANPKVFFDMTIGGQPAGRIVMELYADTTPRTAENFRALCTGEKGAGRSGKPLHYRGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIRKHTGPGILSMANAGPGTNGSQFFICTSKTEWLDGKHVVFGQVVEGMNVVKEIEKVGSSSGKTSRPVVVADCGQLS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0108 173 Gene3D - 1 173 IPR029000 -
Glsi01g0108 173 SUPERFAMILY Cyclophilin-like 3 172 IPR029000 -
Glsi01g0108 173 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Glsi01g0108 173 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 8 171 IPR002130 GO:0000413|GO:0003755
Glsi01g0108 173 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 172 - -
Glsi01g0108 173 PIRSF Peptidylpro_ismrse 1 173 IPR024936 GO:0003755
Glsi01g0108 173 FunFam Peptidyl-prolyl cis-trans isomerase 1 173 - -
Glsi01g0108 173 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 170 IPR002130 GO:0000413|GO:0003755
Glsi01g0108 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Glsi01g0108 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Glsi01g0108 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Glsi01g0108 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Glsi01g0108 173 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Glsi01g0108 173 CDD cyclophilin_ABH_like 5 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0108 Glsi-ChrGlsi01 902260 902781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0108 19 153 U-box Gene Family AT5G67530 48.529 2.29e-30 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g0108 01 902260 902781 Glsi01g0108 01 902260 902781 ECH