Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0098 ATGGGTGAGAGGTTGAGTGGGAAGGTGAAATGGTTCAATGACCAGAAGGGTTTTGGGTTCATAACCCCTGACGATGGCGGTGAGGATCTCTTCGTCCACCAGTCTTCGATCCGATCCCAAGGGTTTCGGAGTCTCGGGGATGGAGAGTCTGTGGAATTTGTGATCGATTCCGATTCTGACGGTCGATCCAAAGCCGTTGATGTCACGGGTCCGGAGGAGTCGCCTGTTGAGGGAAGCCGACGCGGTGGCGGAGGTGGAGGCGGAGGTGGAGGGGGTAGAGGCTATGGCGGTGGACGAGGAGGCGGTGGCTATGGAGGAAGCGGTGGATATGGTGGTGGACGAGGCGGAAGAGGTGGGGGTGGCGGTGGCTATGGTGGTGGGTATGGAGGCGGAGGCGGCGGTGGGGCTTGTTATAACTGTGGGGAGCCAGGTCACATAGCTAGGGACTGCTTCCAGGGCCAGGGAGGCGGCGGCGGCGGCGGAAGGTACGGAAGTGGCGGTTATGGTGGAGGAGGAGGAGGCGGCGGCGGCGGGAGTTGCTATAACTGTGGTGAGTCAGGGCATTTCGCGAGGGATTGCCCTAGCAGCGCTCGTTGA 597 0.6131 MGERLSGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSQGFRSLGDGESVEFVIDSDSDGRSKAVDVTGPEESPVEGSRRGGGGGGGGGGGRGYGGGRGGGGYGGSGGYGGGRGGRGGGGGGYGGGYGGGGGGGACYNCGEPGHIARDCFQGQGGGGGGGRYGSGGYGGGGGGGGGGSCYNCGESGHFARDCPSSAR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0098 198 MobiDBLite consensus disorder prediction 55 102 - -
Glsi01g0098 198 Pfam Zinc knuckle 136 152 IPR001878 GO:0003676|GO:0008270
Glsi01g0098 198 Pfam Zinc knuckle 179 195 IPR001878 GO:0003676|GO:0008270
Glsi01g0098 198 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Glsi01g0098 198 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Glsi01g0098 198 SMART c2hcfinal6 179 195 IPR001878 GO:0003676|GO:0008270
Glsi01g0098 198 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Glsi01g0098 198 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Glsi01g0098 198 Gene3D - 175 198 - -
Glsi01g0098 198 Gene3D - 132 159 - -
Glsi01g0098 198 ProSiteProfiles Zinc finger CCHC-type profile. 180 195 IPR001878 GO:0003676|GO:0008270
Glsi01g0098 198 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Glsi01g0098 198 SMART csp_8 6 71 IPR011129 GO:0003676
Glsi01g0098 198 Gene3D - 2 82 IPR012340 -
Glsi01g0098 198 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Glsi01g0098 198 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Glsi01g0098 198 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Glsi01g0098 198 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Glsi01g0098 198 PANTHER COLD SHOCK DOMAIN PROTEIN 2 107 196 - -
Glsi01g0098 198 FunFam Universal minicircle sequence binding protein (UMSBP), putative 173 198 - -
Glsi01g0098 198 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Glsi01g0098 198 SUPERFAMILY Retrovirus zinc finger-like domains 126 196 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0098 Glsi-ChrGlsi01 837023 837619 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Glsi01g0098 CSD 9.5e-26 CL0021