LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi01g0093	ATGCAAAATAATAAACAGACTACTATAGCAATGCGTAGAGAGATCTCGTTTCTCGTTCGACCACGATGCCTCCTTCTCTTGCTTGCTCTTTCAATTTTCCTCATTCTCGCTTTCTCTGGCTCTAGACGGGTTGAGGATAAAGCAGAAGAGGAGCCTGAAATTACGCATAGAGTATACTTGGAAGTGGATATTGATGAAATACGTTTAGGTAGGATCGTGATTGGATTATATGGCCAAGTTGTACCAAAAACTGTGGAAAATTTTAGAGCTTTGTGCACAGGGGAGAAAGGAAAGAGTGCCAGTGGCAAAAAACTTCATTATAAAGGAACACCATTTCATCGCATAATATCTGGTTTCGTGATTCAGGGTGGAGACATTGTTCACCGTGATGGCCGTGGATATGAATCTATTTATGGTGGCACCTTTCCTGATGAGAATTTCAAGATAAAACATTCACATGGTGGAATTGTATCTATGGTGAATACGGGACCTGATTCCAATGGCTCACAGTTTTTTATCACCACGGTGAAGGCCAGCTGGTTGGACGGAGACCATGTTGCCTTTGGCAAGGTTATTGATGGCATGGATGTTGTTTTTGCCGTTGAAGGGGGAGCTGGAACCTACAGTGGGAAACCCAGAAAGAAGGTAGTGATTGCAGAGACTGGTGAGATACCCAAGAGCCAGTGGGATGAGGAAACAAAAACATGA	708	0.4322	MQNNKQTTIAMRREISFLVRPRCLLLLLALSIFLILAFSGSRRVEDKAEEEPEITHRVYLEVDIDEIRLGRIVIGLYGQVVPKTVENFRALCTGEKGKSASGKKLHYKGTPFHRIISGFVIQGGDIVHRDGRGYESIYGGTFPDENFKIKHSHGGIVSMVNTGPDSNGSQFFITTVKASWLDGDHVAFGKVIDGMDVVFAVEGGAGTYSGKPRKKVVIAETGEIPKSQWDEETKT	235

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi01g0093	235	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	107	124	IPR020892	GO:0003755\|GO:0006457
	Glsi01g0093	235	Gene3D	-	43	230	IPR029000	-
	Glsi01g0093	235	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	66	222	IPR002130	GO:0000413\|GO:0003755
	Glsi01g0093	235	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	59	223	IPR002130	GO:0000413\|GO:0003755
	Glsi01g0093	235	FunFam	Peptidyl-prolyl cis-trans isomerase	44	230	-	-
	Glsi01g0093	235	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	183	198	IPR002130	GO:0000413\|GO:0003755
	Glsi01g0093	235	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	170	182	IPR002130	GO:0000413\|GO:0003755
	Glsi01g0093	235	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	155	170	IPR002130	GO:0000413\|GO:0003755
	Glsi01g0093	235	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	76	91	IPR002130	GO:0000413\|GO:0003755
	Glsi01g0093	235	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	112	124	IPR002130	GO:0000413\|GO:0003755
	Glsi01g0093	235	SUPERFAMILY	Cyclophilin-like	53	224	IPR029000	-
	Glsi01g0093	235	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	57	223	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi01g0093	Glsi-ChrGlsi01	797040	800783	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi01g0093	70	220	U-box Gene Family	AT5G67530	40.789	6.87e-26	103

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi01g0093	01	797040	800783	Glsi01g0093	01	797040	800783	ECH