Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0087 ATGGGGAGGTCTCCTTGCTGCGAAAAAGCTCACACAAACAAAGGCGCATGGACCAAGGAAGAAGACGATCGCCTCATAGCTTATATTAGAGCTCACGGCGAGGGTTGTTGGCGCTCTCTTCCCAAAGCCGCCGGTCTTCTCCGATGCGGCAAGAGTTGCCGTCTCCGGTGGATCAACTATCTCCGTCCCGACCTTAAACGCGGCAATTTCACTGAAGAAGAAGACGAACTCATCATCAAACTCCATAGTCTACTGGGTAACAAGTGGTCTTTGATTGCCGGAAGATTACCCGGAAGAACGGACAATGAGATAAAGAATTACTGGAATACTCATATAAGAAGGAAGCTTCTGAGCAGGGGAATTGACCCTACAACTCATAGGCCTCTCAACGAAGGTTCTGCCCAGAATCAAGAAGCCACCACCACCACCACAATATCTTTTGCTTCGTCCGCTTCCGCTAAACAAGAAGAGAACAAAGATTCGAAGAGACCCATCGTAGAACGATGCCCAGATTTGAACCTTGAGCTAACGATTAGTCCTCCCCACCATCAAAACCAGCACGACGAACAATTACCATTGAAAAGTGGAGGGAGAAGCCTTTGTTTCGCTTGCAGCTTGGGTCTGCAAAACAGCAAGGATTGCAGCTGCGGAATTGGCGAGATTAATGGCAGCAGCGCTAGTGGGAGCAGCAATGGTGGCTACGATTTCTTGGGATTGAAAAGTGCCGTTTTGGATTACAGAAGCTTGGAAATGAAATGA 759 0.4835 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRPLNEGSAQNQEATTTTTISFASSASAKQEENKDSKRPIVERCPDLNLELTISPPHHQNQHDEQLPLKSGGRSLCFACSLGLQNSKDCSCGIGEINGSSASGSSNGGYDFLGLKSAVLDYRSLEMK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0087 252 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 177 - -
Glsi01g0087 252 MobiDBLite consensus disorder prediction 146 165 - -
Glsi01g0087 252 MobiDBLite consensus disorder prediction 119 141 - -
Glsi01g0087 252 CDD SANT 69 112 IPR001005 -
Glsi01g0087 252 SMART sant 66 114 IPR001005 -
Glsi01g0087 252 SMART sant 13 63 IPR001005 -
Glsi01g0087 252 CDD SANT 16 61 IPR001005 -
Glsi01g0087 252 Gene3D - 69 163 - -
Glsi01g0087 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi01g0087 252 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi01g0087 252 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi01g0087 252 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi01g0087 252 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi01g0087 252 Gene3D - 14 66 - -
Glsi01g0087 252 FunFam Myb transcription factor 68 137 - -
Glsi01g0087 252 FunFam MYB-related transcription factor 13 66 - -
Glsi01g0087 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi01g0087 252 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0087 Glsi-ChrGlsi01 755144 756007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0087 1 252 MYB Transcription Factor Family AT4G38620 60.900 2.08e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi01g0087 Myb_DNA-binding 3.4e-14 CL0123