Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0085 ATGGGTTTATTCAGTACCATATTCGGGATTTTTGGATTTGGAGTTGGGATTTCGATTGGTCTTGTTGCTGGATATTTTCTCTTCATTTACGTTCAACCCTGTCGTGTAGAGGATCCTAAAATAATTCCATTGGCGGAGCAAGACCCTGCAATTTTGCAACGAATGCTTCCTGAGATTCCAATTTGGATGAAAAACCCAGACTTTGAGCGGGTTGACTGGCTAAACCAGTTTATTGATTATATGTGGGGGTGGCTTGATAAGGCTATTTGCAAGACTGCAAAGGACATTGCAACACCTATAATTGCTGAGCAGATTAAAGGTTATAAAATAGAGTCTGTTGAGTTTGAAGTGTTCACACTGGGTACCCTGCCGCCAACTTTTCAAGGGATGAAAGCTTATACAACTGATGAGAAGGAGTTGATTATGGAGCCTTCAATAAAATGGGCCGGAAATCCTAATATCACTGTTGCTGTTAAGGCATTTGGGTTGAAAGCAACTGTTCAGGTGGTGGATTTGCAAGTTTTTCTTGTGCCTCGTATTACTTTGAAGCCTTTGGTTCCAAACTTTCCTTGCTTTGCAACAATCTATGTGTCTCTCATGGAAAAGCCACACGTTGACTTTGGGCTAAAACTTTTAGGGGCTGATCTTATGTCTATTCCTGGCCTCTACAGGTTTGTTCAGGAGTTTATCAAAGATCAGGTTGCGAATATGTATTTATGGCCCAAAACACTGGAAGTTCAAATTTTAGATCCAATAAAATCCATGAATAGGCCAGTTGGAATTCTCAATGTAAAGGTTCTGAGAGCGATAAAGCTGAGGAAGAAAGATTTTCTCGGTGCGTCTGACCCTTATGTAAAACTAAAGCTTAGTGATGAAAAGGCACCATCAAAAAAGACTATCGTGAAGCAGAAAAACTTGAATCCCGAATGGAATGAGGAATTTAATATGCTTGTTAAAGATCCTGAGGTCCAGGTTTTAAGGCTTAAAATTCTGGATTGGGAGCAGGTAGGGAAGCATGAAAAGATGGGTGTAAATATAGTCCCTTTGAAAGAACTTTCCCCAGAGGAGCCTAAAGAATTTACTCTTGATCTCTTGAAAAACCTGGATCCCGATGATTGCTTAAATGAGAAGTCACGTGGTCAGGTTGTTGTAGAATTGACATATAAACCATTCAAAGAGGAGGACTTACTCAAGAGTGAAGAGAAACAGACAGTACAAAGGGCTCCTGAAGGTACTCCTGCCGGTGGAGGTCTGCTTGTGGTTATAGTCCACGAAGCCCAAGATGTTGAAGGAAAGTACCACACTAATCCTCAAGCACGGATTATTTTCAAAGGGGAGCAGAAAAGGACTAAGCGCATTAAAAAGAACAGAGATCCAAGATGGGAAGAGGAGTTCCAATTTATGGCGACAGAGCCTCCCACTAACGAAAAAATACACGTGGAAGTTGTTAGCACCTCATCACGCAAGCTGCTGCATCAAAAGGAATATCTGGGTTATGTTGAGATCAGTCTTGCGGATGTTGTTGCTAACAAGAGAATCAACGAAAGGTACCATCTTATAGACTCAAAGAACGGTCGCATCCAGATAGAGTTGCAATTAACTACAAAATCAAGTTGTGTTGTCAACTCACGAAATGAGCACGAATGCATTGGAGTAGCACCCCGCGCGGGCTATCCAGCAATCTCTTACCACTGGCCTTTCCTGCTAGTAGCGCCAAAACAAAATCCAGGGGCTCTTCTTCTGCACATTTTTATTTCTGGAGCTGAAAAGCCCTCCAAGCAAACAGGAACCAGTGAGAAGGAACTTTCAATGGCGTTACCGGTGGTTGACACAGAGTACCTGAAGGAAATCGGCAAGGCTCGTCGTGATCTCCGTGGGCTCATCTCCAGCAGGAATTGCGCTCCTCTCATGCTTCGCTTGGCTTGGCACGATGCAGGCACTTACGATGCCAAGACGAAGACGGGTGGACCTAATGGCTCCATAAGGAACGGGGAAGAGTATTCACATGGCTCCAACAATGGCTTGAAGAAGGCTGTTGATTTCTGCGAGGAAGTGAAGGAAAAACATCCTAAGATCACATATGCAGACCTTTACCAGCTTGCTGGTGTTGTTGCTGTTGAAATTACTGGAGGACCTACAATTGAATTCATTCCAGGAAGAAGGGATTCAATAATATCTCCCAAAGAAGGGCAGCTTCCCGATGCTAAACAAGGTGTGTTCCATCTACGCGATATTTTTTATCGAATGGGCCTGTCCGACAGGGATATTGTTGCGCTGTCTGGGGGACATACTCTGGGAAGAGCGCATCCAGAGAGATCAGGTTTTGATGGCCCTTGGACAGAGGAACCACTGAAGTTTGATAACTCATACTTCATGGAACTGTTAAAAGGAGATTCTGAGGGGCTGCTTAAACTTCCAACAGACAAGGCCTTATTGGAGGATCCTGAATTTCATCGTTATGTTGAGCTATATGCAAAGGATGAGGATGCATTTTTTAGAGATTATGCTGAATCACATAAGAAACTTTCAGAGCTAGGCTTTGCGCCAAGTTCAAAGGCAACTGTCAAGGAAGGCATCGTACTAGCACAAGGTGCTGTTGGAGTAGCAGTCACTGCCGCTGTGGTGATCCTCGCTTACTTGTATGAAGTTCGCAAAAGGGTGAGGTAG 2667 0.4361 MGLFSTIFGIFGFGVGISIGLVAGYFLFIYVQPCRVEDPKIIPLAEQDPAILQRMLPEIPIWMKNPDFERVDWLNQFIDYMWGWLDKAICKTAKDIATPIIAEQIKGYKIESVEFEVFTLGTLPPTFQGMKAYTTDEKELIMEPSIKWAGNPNITVAVKAFGLKATVQVVDLQVFLVPRITLKPLVPNFPCFATIYVSLMEKPHVDFGLKLLGADLMSIPGLYRFVQEFIKDQVANMYLWPKTLEVQILDPIKSMNRPVGILNVKVLRAIKLRKKDFLGASDPYVKLKLSDEKAPSKKTIVKQKNLNPEWNEEFNMLVKDPEVQVLRLKILDWEQVGKHEKMGVNIVPLKELSPEEPKEFTLDLLKNLDPDDCLNEKSRGQVVVELTYKPFKEEDLLKSEEKQTVQRAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPQARIIFKGEQKRTKRIKKNRDPRWEEEFQFMATEPPTNEKIHVEVVSTSSRKLLHQKEYLGYVEISLADVVANKRINERYHLIDSKNGRIQIELQLTTKSSCVVNSRNEHECIGVAPRAGYPAISYHWPFLLVAPKQNPGALLLHIFISGAEKPSKQTGTSEKELSMALPVVDTEYLKEIGKARRDLRGLISSRNCAPLMLRLAWHDAGTYDAKTKTGGPNGSIRNGEEYSHGSNNGLKKAVDFCEEVKEKHPKITYADLYQLAGVVAVEITGGPTIEFIPGRRDSIISPKEGQLPDAKQGVFHLRDIFYRMGLSDRDIVALSGGHTLGRAHPERSGFDGPWTEEPLKFDNSYFMELLKGDSEGLLKLPTDKALLEDPEFHRYVELYAKDEDAFFRDYAESHKKLSELGFAPSSKATVKEGIVLAQGAVGVAVTAAVVILAYLYEVRKRVR 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0085 888 PRINTS Haem peroxidase superfamily signature 755 770 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Haem peroxidase superfamily signature 692 709 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Haem peroxidase superfamily signature 779 794 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Haem peroxidase superfamily signature 634 648 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Haem peroxidase superfamily signature 710 722 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 ProSitePatterns Peroxidases proximal heme-ligand signature. 755 765 IPR019793 -
Glsi01g0085 888 CDD C2 262 364 - -
Glsi01g0085 888 CDD C2 419 520 - -
Glsi01g0085 888 CDD SMP_SYT 60 248 - -
Glsi01g0085 888 ProSiteProfiles C2 domain profile. 398 517 IPR000008 -
Glsi01g0085 888 SUPERFAMILY Heme-dependent peroxidases 617 852 IPR010255 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 FunFam Cytosolic ascorbate peroxidase 620 737 - -
Glsi01g0085 888 FunFam Synaptotagmin-2 isoform A 255 409 - -
Glsi01g0085 888 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 5 532 IPR045050 GO:0008289
Glsi01g0085 888 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 417 535 IPR035892 -
Glsi01g0085 888 PRINTS C2 domain signature 326 334 IPR000008 -
Glsi01g0085 888 PRINTS C2 domain signature 304 317 IPR000008 -
Glsi01g0085 888 PRINTS C2 domain signature 277 289 IPR000008 -
Glsi01g0085 888 CDD ascorbate_peroxidase 607 849 - -
Glsi01g0085 888 ProSiteProfiles Plant heme peroxidase family profile. 634 888 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 393 IPR035892 -
Glsi01g0085 888 SMART C2_3c 418 516 IPR000008 -
Glsi01g0085 888 SMART C2_3c 261 361 IPR000008 -
Glsi01g0085 888 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Glsi01g0085 888 Pfam Peroxidase 622 827 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 Pfam C2 domain 418 519 IPR000008 -
Glsi01g0085 888 Pfam C2 domain 260 361 IPR000008 -
Glsi01g0085 888 Gene3D - 620 846 - -
Glsi01g0085 888 Gene3D C2 domain 255 412 IPR035892 -
Glsi01g0085 888 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Glsi01g0085 888 FunFam L-ascorbate peroxidase, cytosolic 733 839 - -
Glsi01g0085 888 ProSitePatterns Peroxidases active site signature. 634 645 IPR019794 GO:0004601
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 710 722 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 771 795 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 731 748 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 652 662 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 634 649 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 691 709 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 749 770 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 823 847 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 613 633 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 PRINTS Plant ascorbate peroxidase signature 666 690 IPR002207 GO:0004601|GO:0006979|GO:0020037
Glsi01g0085 888 FunFam Extended synaptotagmin-2 418 535 - -
Glsi01g0085 888 Gene3D C2 domain 418 538 IPR035892 -
Glsi01g0085 888 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Glsi01g0085 888 Gene3D Peroxidase, domain 2 733 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0085 Glsi-ChrGlsi01 736388 750254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0085 634 842 Peroxidase AT4G16270 30.588 7.05e-19 87.4