Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0083 ATGGAGATATCAAGTCGCATCCTTTTAATTACATTGCTTTCCCTCGTGGGTTCTTCTGCCTTCGCCCTTGATGTGAACCAGACCGTGACTTACGACGGAAGGTCACTGATAATCAATGGAAAACGAGAGCTTCTATTCTCGGGTTCTATCCATTACACACGTAGCACCCCAGAGATGTGGCCCGACGTTCTTACAAAGGCCAGACGTGGAGGTTTAAACGTGATTCAGACTTACGTGTTTTGGAACGCCCATGAGCCTGAGAAAGGAAAGTTCAACTTTGAAGGAAACTATGATTTGGTGAAGTTCCTTCGGCTTGTTCAAGAGAAAGGAATGTATGTAACCCTTCGACTTGGACCTTTCATCCAGGCTGAATGGAATCATGGAGGACTTCCATATTGGCTAAGAGAGGTGCCAGACATCATATTCCGCTCTGACAATGAACCCTTCAAGTACTACATGAAAAGATACGTGACAATGGTGATAGACAAGATGAATGCTGAGAAGCTCTTTGCTTCGCAAGGAGGCCCTATCATCTTGGCCCAGATTGAGAATGAGTACAACCATATCCAACTTGCATATAGAGAGAAGGGAGATAGTTATGTTCAGTGGGCTGCAAACATGGCAGTGGCAACGAATGCAGGAGTTCCATGGATCATGTGCAAGCAAAGGGATGCTCCTGATCCAGTGGTCAATACATGCAATGGAAGGCACTGTGGTGATACCTTCAGTGGCCCAAACAAACCGCACAAGCCTGCACTATGGACTGAAAACTGGACTGCCCAATATAGAGTTTTTGGAGATCCACCATCCCAGCGATCTGCAGAAGACATTGCCTTCTCAGTTGCTCGCTTCTTCGCTAAGAATGGATCTTTGGTCAACTACTATATGTACCATGGTGGAACCAATTTTGGTAGAACAAGCGCTGTTTTCACCACAACCCGTTATTACGATGAAGCTCCTCTTGATGAATACGGTCTGATAAGAGAACCAAAATGGGGTCACATGAGGGATGTTCACAGGGCTCTGAACCTGTGTAAGAAGGCTCTGCTAACGGGTACATCAAGAGTTAAGAAGGTGAACGAATATCTAGAGATTATTGTCTATGAGAAGAAGCAAAATGGTTTATGTGCTGCTTTCTTAACTAACAACCACACCCAAATGGCTGAGACTATAAAGTTCAAAGGTCAGACGTATTACCTGCCGCCGCATTCCATTAGTATCCTCCCTGATTGCAAGACTGTGGTCTACAACACTCAAACAATTGCTTCGCAACATAATTCAAGGAACTTCAAGAGATCACAGGTTGCAAACAATAATAATAACTGGGAAGTGTTTTCTGAAACCATTCCAACTTCCCAGCAATTGTCTGTCAATTCGAAATTTCCTCTGGAGCTTTACGATTTACTTAAGGACACCACTGACTATGCATGGTACACCACCAGCATTGAGTTGGGTCCATCAGACTTGCCAAGGAAGAATGAAGTACGTCCAGTTCTTCGTATTTTAAGTCTTGGCCATTCATTGCTTGCATTTGTAAATGGAGAGTTCGTCGGAACCGCGCATGGTACCCATGAGGAGAAATCTTTTGAATTCCAGTCACCTGTAAAGTTGAAGGCTGGGGTTAACTACATAACTATCTTGGGCAGCACAGTTGGACTACCAGACAGTGGAGCCTACATGGAGCACAGGTACGCTGGACCCAAGTCTATAAGCGTTCTTGGTCTCAACACTGGTACAATTGATCTGAGTGTCAACGGTTGGGGTCATCAGGTTGCTCTCACAGGTGAAAAGCTTGGCATTTTCACTGAGGAGGGATCAAAGAAGGTAAAATGGAATAAGGTCAAAGGACCTTCGCCGCCTCTCTCTTGGTACAAGAAAGAATTTGAAAGCCCAGAAGGACAGGGTCCTGTCGCCATTCGCATGACTGGTATGGGGAAGGGAATGATTTGGGTCAACGGTAAAAGCATTGGTCGTCACTGGATGAGCTACCTCTCTCCTCTTGGATCGCCCACTCAATCAGAGTACCACATCCCAAGAGCTTACCTGAAGCCAAAGGACAATTTGCTTGTTGTATTGGAGGAGGCAGAAGCAAAGCCAGACCAGATTGAAATCCTAAACGTTGATAGAGACACAATCTGCAGTTTCATTACGGATAATCACCCACCCAATGTAAAATCCTGGGACAGCAAGAACATGAAATTCCATTCCGTTGTGGATGATGCGACGGCGGCAGCTTCACTCAAGTGTCCGAACCACAAGAAGATCGTAGCTGTGGAGTTTGCAAGCTTTGGAAATCCTTCGGGATTCTGCGGATCCTATGATCTGGGAAATTGCAACGCACCAGCCACCAAGCAGGTTGTGGAGCAGCATTGCCTGGGGAAAGTAGCTTGTTCAGTTCCAATGGACCGAGCACTATTCTCCAAGAATGGCGACGCTTGCCCAGATTTGATGAAGACGCTTGCAATCCAAGTGAGATGTTCCTATTAG 2487 0.4572 MEISSRILLITLLSLVGSSAFALDVNQTVTYDGRSLIINGKRELLFSGSIHYTRSTPEMWPDVLTKARRGGLNVIQTYVFWNAHEPEKGKFNFEGNYDLVKFLRLVQEKGMYVTLRLGPFIQAEWNHGGLPYWLREVPDIIFRSDNEPFKYYMKRYVTMVIDKMNAEKLFASQGGPIILAQIENEYNHIQLAYREKGDSYVQWAANMAVATNAGVPWIMCKQRDAPDPVVNTCNGRHCGDTFSGPNKPHKPALWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFAKNGSLVNYYMYHGGTNFGRTSAVFTTTRYYDEAPLDEYGLIREPKWGHMRDVHRALNLCKKALLTGTSRVKKVNEYLEIIVYEKKQNGLCAAFLTNNHTQMAETIKFKGQTYYLPPHSISILPDCKTVVYNTQTIASQHNSRNFKRSQVANNNNNWEVFSETIPTSQQLSVNSKFPLELYDLLKDTTDYAWYTTSIELGPSDLPRKNEVRPVLRILSLGHSLLAFVNGEFVGTAHGTHEEKSFEFQSPVKLKAGVNYITILGSTVGLPDSGAYMEHRYAGPKSISVLGLNTGTIDLSVNGWGHQVALTGEKLGIFTEEGSKKVKWNKVKGPSPPLSWYKKEFESPEGQGPVAIRMTGMGKGMIWVNGKSIGRHWMSYLSPLGSPTQSEYHIPRAYLKPKDNLLVVLEEAEAKPDQIEILNVDRDTICSFITDNHPPNVKSWDSKNMKFHSVVDDATAAASLKCPNHKKIVAVEFASFGNPSGFCGSYDLGNCNAPATKQVVEQHCLGKVACSVPMDRALFSKNGDACPDLMKTLAIQVRCSY 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0083 828 Gene3D - 384 563 - -
Glsi01g0083 828 FunFam Beta-galactosidase 25 345 - -
Glsi01g0083 828 FunFam Beta-galactosidase 589 713 - -
Glsi01g0083 828 SUPERFAMILY Galactose-binding domain-like 584 731 IPR008979 -
Glsi01g0083 828 PANTHER BETA-GALACTOSIDASE RELATED 20 750 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 174 186 IPR019801 GO:0004553|GO:0005975
Glsi01g0083 828 Gene3D Glycosidases 24 345 - -
Glsi01g0083 828 SUPERFAMILY (Trans)glycosidases 26 345 IPR017853 -
Glsi01g0083 828 Gene3D - 731 828 IPR043159 -
Glsi01g0083 828 Pfam Galactose binding lectin domain 747 826 IPR000922 GO:0030246
Glsi01g0083 828 ProSiteProfiles SUEL-type lectin domain profile. 744 827 IPR000922 GO:0030246
Glsi01g0083 828 CDD Gal_Rha_Lectin_BGal 735 826 - -
Glsi01g0083 828 Pfam Glycosyl hydrolases family 35 35 341 IPR031330 -
Glsi01g0083 828 FunFam Beta-galactosidase 295 423 - -
Glsi01g0083 828 SUPERFAMILY Galactose-binding domain-like 405 566 IPR008979 -
Glsi01g0083 828 PRINTS Glycosyl hydrolase family 35 signature 39 56 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 PRINTS Glycosyl hydrolase family 35 signature 115 134 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 PRINTS Glycosyl hydrolase family 35 signature 60 78 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 PRINTS Glycosyl hydrolase family 35 signature 172 187 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Glsi01g0083 828 Gene3D - 588 715 - -
Glsi01g0083 828 Pfam Beta-sandwich domain in beta galactosidase 349 421 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0083 Glsi-ChrGlsi01 716222 720299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0083 29 826 Glycoside Hydrolase AT2G16730 61.548 0.0 1087