Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0079 ATGGTTCGTTCAACAACAGAGAACATTATCGACCAGCATATATTTGCAGGAGTTCTGCAAAGTCAAGGAGGAATAGAATTTATAGCTGTTTTTGGGATTGAACAGGTAGGTCTCATTGGTCAGGTCTTAACAGGAAGCTCCTTTCGAAACATTCTTATCAGAGAGTCAAAGAAGCATGCTGCTCTGGCTCTAGTGGTTGGAAGGAGCAAGCAAAATGGTCTTGGGGGTCGGGCTTCCACAGCTAAATATTGCGCCAAACGACTGTCACCCACCACCGATGTTCTAGCTATCCAAGATGGAAGAATTGTCTTCAGAAGGTGCACCAATTATCAACTACCAGGTCTTATACAAGATCCAAGACCTAGTCTTACAAGCCTAGATAACCCCAGCGAAAAAGATGTCCTGTCTGAATTTGGTGACTCCGAGGTGGCGACAGTAAAATCAATATGCGAAGAGTCAAGAGAAGATACCACAGAGTTGAAGGAAGAAGCATTTGACAGAGGACAAACGTGCAAGAAAGTCAAACCTTCAAGATCAATCTCTCTGTTTACAGGTGACCCTTTTGAACAGAAGCTTGGATGGCCCTTGCTCCGTAGAGCTAATTCAGGAATCTCAGAAAGTCGTCTTGCGAGGAACATGTCTGTGGTGCAGTGGGTAATGAGCTTCCCAGATCGTTCTCCACGGAAAAGCTCTTGCTGTTCATCTATTGAAGAAAATCCCTCAGAAAGGGACATCAGTGACACTGAAGATGTGAACCATAAACACCGTTCAACTTCATCTGTTGAGCTTCCAAAGGGATTGGAGGGGATTTTGGACATGAATTCATTTGATTGCAAGTGGTTCAACCTTGAGGATCTGAAGTCATGGACTTCTAAATTCTCTTCAGGAAATCTTATTGGGAAAGGAGGGAGTAACCGTGTATACAGAGGAATTCTTCCTGATGGAAAGCCAATTGCAGTCAAAGTTTTGCGGTCATCAAAAGAAGCTTGGAAAGATTTTGCTCAGGAAGTGGAAATAATATCCTCATTGAAGCACAAAAGCATCACACCTTTACTTGGGATTTGCATTGAAGAAAATTCTTTAATTTCTGTCTATGAATTTTTCCCCAAAGGAAGCTTAGAGGACAATTTACAAGGTAAGAACAAGGATGGATACACAATGTCATGGAAAGTGAGATTTAATGTAGCTGTTGGGATAGCCGAAGCCCTGAACTACCTACACAAGGAGACTTTGAAGCCTGTTATACACAGAGATGTCAAGTCTTCCAATATTCTTCTTTCCCATGAGTTTGAACCGCAATTAACTGATTTTGGACTTGCAATTTGGGGACCAACAAGTTCATCTTTTCTGACACAAGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGGAAAGTAAGTGACAAGATAGATGTCTATGCGTTTGGTGTGGTTCTACTTGAACTAATATCAGGAAGGAAACCAATCAGCTGTGAGAGTTGCAAGGGACAGGAGAGCTTGGTCGTGTGGGCAAAACCAATAATAGAGAGTGGGGACGTGAAAGGCTTATTGGACTCCAATTTAGAAGGGAAGTTTGATGAGGCCCAATTGCAGAGAATGGTTCTGGCAGCAACTCTATGCATTACAAGGGCAGCTCGGCTTCGTCCAAAAATGAACCAGATACTGAAGATCCTTAAAGGAGATGAAAGAGTTGAAAATTTGTTAAGCTTCCAAGGGAATGGCGATGAGCATTTAGAAAATCAGGAAAACATTGATGACGAAGTGTATCCAAATTCTAGTGCAGAGTTACATCTGAGTCTTGCATTACTTGGTGTTGATGATGAAACTACATCATCTAGTAGTAGTACAGAGCGGAGCATTAGTCTTTCCTGGGAAGGACAATTGAAAGAACGATGGAGCCGATCATCCAGTTTTAATTAG 1935 0.4202 MVRSTTENIIDQHIFAGVLQSQGGIEFIAVFGIEQVGLIGQVLTGSSFRNILIRESKKHAALALVVGRSKQNGLGGRASTAKYCAKRLSPTTDVLAIQDGRIVFRRCTNYQLPGLIQDPRPSLTSLDNPSEKDVLSEFGDSEVATVKSICEESREDTTELKEEAFDRGQTCKKVKPSRSISLFTGDPFEQKLGWPLLRRANSGISESRLARNMSVVQWVMSFPDRSPRKSSCCSSIEENPSERDISDTEDVNHKHRSTSSVELPKGLEGILDMNSFDCKWFNLEDLKSWTSKFSSGNLIGKGGSNRVYRGILPDGKPIAVKVLRSSKEAWKDFAQEVEIISSLKHKSITPLLGICIEENSLISVYEFFPKGSLEDNLQGKNKDGYTMSWKVRFNVAVGIAEALNYLHKETLKPVIHRDVKSSNILLSHEFEPQLTDFGLAIWGPTSSSFLTQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGRKPISCESCKGQESLVVWAKPIIESGDVKGLLDSNLEGKFDEAQLQRMVLAATLCITRAARLRPKMNQILKILKGDERVENLLSFQGNGDEHLENQENIDDEVYPNSSAELHLSLALLGVDDETTSSSSSTERSISLSWEGQLKERWSRSSSFN 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0079 644 MobiDBLite consensus disorder prediction 226 257 - -
Glsi01g0079 644 SMART serkin_6 293 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0079 644 FunFam Putative receptor-like serine/threonine-protein kinase 368 578 - -
Glsi01g0079 644 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 262 367 - -
Glsi01g0079 644 Gene3D Phosphorylase Kinase; domain 1 263 367 - -
Glsi01g0079 644 Gene3D Transferase(Phosphotransferase) domain 1 368 577 - -
Glsi01g0079 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Glsi01g0079 644 SUPERFAMILY Protein kinase-like (PK-like) 275 563 IPR011009 -
Glsi01g0079 644 Pfam Protein kinase domain 295 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0079 644 MobiDBLite consensus disorder prediction 614 644 - -
Glsi01g0079 644 PANTHER OS08G0249100 PROTEIN 142 581 IPR046958 -
Glsi01g0079 644 ProSiteProfiles Protein kinase domain profile. 293 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0079 644 MobiDBLite consensus disorder prediction 240 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0079 Glsi-ChrGlsi01 690503 698959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0079 281 631 Trihelix Transcription Factor Family AT1G70460 38.764 1.90e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi01g0079 Pkinase 1.5e-41 CL0016