Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0072 ATGTCGAAGGAATTGAGCGAAGAAGGGCAAGCCCATCATGGAAAAGACTATGTTGACCCACCACCAGCTCCTCTCATTGACATGGCCGAGATTAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATAGCCACCCTTCTCTTCCTCTACATCACCGTGGCCACAGTCATCGGTTACAAAAAACAAACCGGACCATGCGACGGCGTTGGCCTCCTAGGTATCGCTTGGGCCTTCGGTGGCATGATCTTTGTCCTTGTCTACTGCACCGCCGGTATCTCTGGTGGGCACATAAACCCAGCAGTGACATTTGGGTTGTTCTTGGCACGGAAGGTGTCTCTGGTACGAGCCCTAGCTTACATGATAGCGCAGTGTTTGGGAGCTATATGCGGTGTTGGATTGGTGAAGGCGTTCATGAAGCACTCGTACAACTCGCTGGGTGGAGGGGCTAACTCGGTGGCTTCTGGGTACAACAAAGGCACCGCTCTGGGTGCTGAGATTATCGGTACCTTCGTCCTCGTCTACACCGTTTTCTCTGCCACTGACCCCAAGAGAAGCGCCCGTGACTCCCACGTCCCCGTTTTGGCTCCATTGCCAATTGGGTTTGCTGTATTCATGGTTCACTTGGCCACTATCCCCATAACTGGAACTGGTATAAACCCTGCTAGGAGCTTCGGTGCTGCTGTGATCTACAACAATGGCAAAGTCTGGGACGACCAGTGGATATTCTGGGTCGGTCCATTCGTGGGAGCATTGGCAGCAGCGGCTTATCACCAGTACATTCTGAGGGCAGCAGCTATCAAGGCGTTGGGATCCTTCCGAAGCAACCCCACAAATTAA 843 0.5314 MSKELSEEGQAHHGKDYVDPPPAPLIDMAEIKLWSFYRALIAEFIATLLFLYITVATVIGYKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALAYMIAQCLGAICGVGLVKAFMKHSYNSLGGGANSVASGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNGKVWDDQWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0072 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g0072 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g0072 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g0072 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g0072 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g0072 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g0072 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g0072 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 269 IPR034294 -
Glsi01g0072 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g0072 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Glsi01g0072 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Glsi01g0072 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Glsi01g0072 280 SUPERFAMILY Aquaporin-like 29 264 IPR023271 -
Glsi01g0072 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0072 Glsi-ChrGlsi01 637911 639356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0072 1 280 Major Intrinsic Protein MIP AT4G35100 91.786 0.0 530