Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0067 ATGGATATCTCAGCTTTTGTTTCTTCTCCTTCTGTTTTGTCTGTTCTTCCTTTCTGCTCTTGTTTTTCTTGCTTTGTTCAGTCAAAACAAGTAGTACCCTTTACCATTTTGGGAGTTACAAGAGAAAATCCTACTATTATCTGCCAGCTTGTTATCAATATTGTTGCAGGCGACATGAATATCATCACCCAAAACCCATCTGAGAGACTAAGGCCTCTTGTGGGTTTGAATGGCTGGGACTACTGTGTTTACTGGATATTGAGTGAAGACCAAAGGTTTCTTGAGTGGATGGGGTGCTGTTGTGCTGGGACTGAAAATAGTCAAAATAATGGTGGGGAAGAAGAGCTTATTTTCCCTGTTTCTTCTGCAACTTCATGCAGGGATACCATGTTTCCTCATCCCAGAGCAAACCCCTGTGCTCTACTTTCCCAACTTCCCACTTCCAGACCCACAGACTCTGGGATTCATGCGGAGACCCTATTATCCAACCAACCCAATTGGGTGAACTATTCCAATAGTGATTCAAATATTTTGGAAGAGACATTTGGAACCCAGGTTTTGATTCCGGTGTCAAGTGGACTAGTTGAGCTGTTTGTAGCTAAACAAGTGCCTGAAGATCATCAGGTGATTGATTTCGTCACAGCCCAGTGCAATGTCTTAGTGGAGCAGGAAGCTGTGAACCACTCAATCAATATGGATATGAGCTTCAATATTGACGTGAATTCTATAAGTCATATGCAATCAAATCCACTTTTCGGTGAAGAGAATGATGGGAATACTATGGCAGCATCAGAGACGACTTCTCCATTGGACTTCATGCAGCAATTCAATTACAACCCACAAAACAGAGTGAAAAGTGACGGCTTTTTTCAAAACTCCCGAGGTGGTTCCTTTCTTTTGGACAAACAAATGAACACGCTCAAAAGCTCCACAGTAGATGAGTATTCGTATCAGGACGTGCATATTCAGATTGGGGAGCCTTTGGAGAAGAACGAGCAGCAAGGGGACGATAAGGATTTAATCAAACAGGTAGTGGGCAGATCAGATTCAATGTCAGATTGCAGTGATCAGAATGAAGATATTGAGGACGATGTGAAGTATAGGAGGAGGAGTGGGAAAGGCAACCAGTCAAAGAACCTTTTAGCAGAGAGGAGGAGAAGGAAGAAGCTCAATAACAGCTTATATAACCTTCGGTCTCTGGTTCCCAATATATCTAAGCTAGATAGAGCGTCGATTCTTGGGGATGCAATTGAGTTTGTAAAGGATTTGCAGAAGCAAGTGAAAGAACTCCAAGATGAACTTGAAGAACATTCAGACATGGGTGCTGCAGAAAGCGACTGCATCAATGGCGGCCAACACGGAGTCGAAGTTGGACCAAAAGATGAACACGTTAAGACCCAAAATGGATTTCATATGGGGACATCGGGAAATGGCTTTGTCTTGAAGCAAAAACAGGAATTGGATGCTCCCAATGACAAGCAGACACAACAAATGGAGCCGCAAGTGGAAGTGGCTGTGATAGAGGGGAATGAGTTGTTTGTGAAGGTGTTCTGTGAGCATCGCTCTGGTGGGTTTGTGAAACTGATGGAGGCATTCAACACTCTGAACATGGAAGTAGTACATGCAACGGTGACCAGCCACAAAGGCCTCGTGTCTAACGTTTTCAAAGTCGAGAAAAAGGACAATGAAATGGTTGAAGCCGAAGATGTAAGAGACTCTTTGGTGGAGCTAATGCGGAACCCATCAAGAGGGTGGACTAATGAGATGACTACAACTGCACCAGGCGTGGGCAGGGACTATCAACATCACCTTCACAACCACCACATGGGTGCTTATCACCCCCACCATTTACACCATATTCATAGTTAA 1869 0.4382 MDISAFVSSPSVLSVLPFCSCFSCFVQSKQVVPFTILGVTRENPTIICQLVINIVAGDMNIITQNPSERLRPLVGLNGWDYCVYWILSEDQRFLEWMGCCCAGTENSQNNGGEEELIFPVSSATSCRDTMFPHPRANPCALLSQLPTSRPTDSGIHAETLLSNQPNWVNYSNSDSNILEETFGTQVLIPVSSGLVELFVAKQVPEDHQVIDFVTAQCNVLVEQEAVNHSINMDMSFNIDVNSISHMQSNPLFGEENDGNTMAASETTSPLDFMQQFNYNPQNRVKSDGFFQNSRGGSFLLDKQMNTLKSSTVDEYSYQDVHIQIGEPLEKNEQQGDDKDLIKQVVGRSDSMSDCSDQNEDIEDDVKYRRRSGKGNQSKNLLAERRRRKKLNNSLYNLRSLVPNISKLDRASILGDAIEFVKDLQKQVKELQDELEEHSDMGAAESDCINGGQHGVEVGPKDEHVKTQNGFHMGTSGNGFVLKQKQELDAPNDKQTQQMEPQVEVAVIEGNELFVKVFCEHRSGGFVKLMEAFNTLNMEVVHATVTSHKGLVSNVFKVEKKDNEMVEAEDVRDSLVELMRNPSRGWTNEMTTTAPGVGRDYQHHLHNHHMGAYHPHHLHHIHS 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0067 622 Gene3D - 362 439 IPR036638 GO:0046983
Glsi01g0067 622 Pfam Helix-loop-helix DNA-binding domain 381 424 IPR011598 GO:0046983
Glsi01g0067 622 CDD bHLH_AtAMS_like 377 441 - -
Glsi01g0067 622 MobiDBLite consensus disorder prediction 346 385 - -
Glsi01g0067 622 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 201 577 - -
Glsi01g0067 622 CDD ACT_UUR-ACR-like 514 578 - -
Glsi01g0067 622 Coils Coil 413 440 - -
Glsi01g0067 622 SMART finulus 380 429 IPR011598 GO:0046983
Glsi01g0067 622 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 437 IPR036638 GO:0046983
Glsi01g0067 622 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 423 IPR011598 GO:0046983
Glsi01g0067 622 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 68 214 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0067 Glsi-ChrGlsi01 619391 621983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0067 64 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.924 2.47e-140 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi01g0067 bHLH-MYC_N 7.9e-19 CL0161