Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0058 ATGCCATTAGCCGTCACAATTAATTATTACAGAAATTTTCCTTCTTTTCCAGTCGATCTCTGTCCTCCCTCCTCTTTGCCAACATCTCTCTTCTGCTTCAGATCAGAAAACAAGAGTTCAAAAATGGGCGTGGCTCAAAACATTCTTGATATGGAGGAGGGGACCTTGGAGATAGGAATGGAATACAGAACTGTATCTGGTGTTGCTGGACCATTGGTCATTCTTGATAAAGTTAAGGGACCCAAATATCAAGAGATTGTTAATATTCGTTTAGGAGATGGGTCTACTCGGCGTGGGCAAGTTTTAGAAGTTGATGGCGAAAAGGCTGTTGTTCAGGTCTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTGAAAACTCCTGTCTCGCTGGACATGCTCGGGCGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCGCCCATATTGCCCGAGGCTTACTTAGATATATCAGGAAGTTCCATTAACCCCAGCGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAACTCCATTGCTAGAGGTCAGAAGATCCCTCTTTTCTCAGCTGCTGGTCTTCCCCATAATGAAATTGCCGCTCAGATATGTCGTCAAGCTGGCTTAGTCAAGCGATTGGAGAAGACTGATAATCTTCTTGAGGGTGGGGAAGACGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAATTTTTTAAACGTGACTTCGAGGAGAATGGCTCAATGGAGAGAGTGACTCTTTTCCTTAATCTGGCAAATGATCCCACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGCGGAAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCACTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGGCGTGGGTATCCCGGTTACATGTATACAGATCTTGCAACAATCTATGAACGTGCTGGAAGAATTGAGGGGCGAACAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCGACTCCTGATCTTACCGGATATATTACTGAGGGGCAGATATACATAGATAGGCAGCTGCATAACAGACAGATATACCCACCAATCAATGTCCTTCCATCACTGTCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACTCGAAGGGATCATTCTGATGTTTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTACCTGGAATTTTTGGACAAGTTCGAGAGGAAGTTTGTAGCTCAAGGAGCATATGACACCCGCAATATTTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCCCGTGAGCTTCTTCATCGTATACCAGCAAAGACTCTCGACCAGTATTATAGCCGAGATGCCGGTAATTAA 1590 0.4371 MPLAVTINYYRNFPSFPVDLCPPSSLPTSLFCFRSENKSSKMGVAQNILDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRTGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0058 529 CDD ATP-synt_V_A-type_beta_N 61 132 - -
Glsi01g0058 529 CDD V_A-ATPase_B 133 426 - -
Glsi01g0058 529 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 46 526 IPR022879 -
Glsi01g0058 529 PIRSF V-ATPsynth_beta/V-ATPase_B 52 529 IPR022879 -
Glsi01g0058 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 424 IPR027417 -
Glsi01g0058 529 NCBIfam V-type ATPase subunit B 61 527 IPR005723 GO:0033180|GO:0046961|GO:1902600
Glsi01g0058 529 Hamap V-type ATP synthase beta chain [atpB]. 59 527 IPR022879 -
Glsi01g0058 529 FunFam V-type proton ATPase subunit B, brain 70 529 - -
Glsi01g0058 529 ProSitePatterns ATP synthase alpha and beta subunits signature. 409 418 IPR020003 GO:0005524
Glsi01g0058 529 Gene3D - 70 528 - -
Glsi01g0058 529 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 188 418 IPR000194 GO:0005524
Glsi01g0058 529 Pfam ATP synthase alpha/beta family, beta-barrel domain 65 131 IPR004100 GO:0046034|GO:1902600
Glsi01g0058 529 CDD ATP-synt_V_A-type_beta_C 428 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0058 Glsi-ChrGlsi01 578052 586718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0058 36 529 Primary Pumps ATPases(2) AT4G38510 96.356 0.0 971