Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0044 ATGGATTTCTCGCTCAAGAAATCTCTGAAATCCTATACTTCCGGTAAACATTCAAGGAAGATTTCCGCAGCGGGAGACGACGAATTCGTCCGCGAAGAGCTTCCCATTCTCTTCGATCAAGAATCTTCAGCAGATCCTCCTCCTCCACCTCAAGATTCCCATTGTGATTTTTCTTCCTCAATGACTTCCACTAGTCCCTCCCACCGGGGAGAGGTTATCGTCAAAATAGACGAAGGCGACTCCAAAGCTGCAGCCGGAGCCGTACACGGCTGTAAGATTTGGAGGGGTTCCAGCTACGAGTTCTGGAAAGATGAAGATGTCTCCACCGATGCGGGTACTCAAGGAGGGAGCTTCGGTTTCCAGCAACCGGCTCAGGATATGGAGGATCCACCCTCGAAGCTTATTGGTAAATTCTTGCACAACCAGAAACTCTCCGGCGGTATGACGCTGGATATGGATTTAGAAATGGAGGAACTCCAAAATGACATGAATATGCCTTGGGTCGACGAGTCTCCTTCTCCCACGGCGAATCGGTTTTCCAAGGAGCTCAAAGTCTCATTCGAGGATCCCCCTTCCAATGTGGTTGAGGAAGCGAACGATTCCGTAAGACGAAGGTATAATAAGGAATCAGCGCTTAACGAAGAATTTAAAAAACCCCCACAACCGCCGCATCACGATCGTCGTGGGTCTCCTCAAGCTGGTTATAATGGAGGTGGAGATGCCGAGGTTGTGAGGTGTACCTCAAACGCCTCTTTTGAAAGAAACATTTCATTGCAGAGGAAGTCGGGTTTGATGAGGGCTAAAACTAGATCAAGATTGATGGACCCACCGTCAGAGGAACTGGAACGGAAATCTGAACGGGTCCCAAAATCAGGGCAAATGTTTTCGGGTTTGATGGGGAAGAAAGGGGATGAGGAGGAAGACGATCCGTTTTTGGAAGAGGATCTTCCGAATGAGTTCAAAAAAACCAAATTCAGCATATGGATTCTGCTTGAGTGGTTGAGTTTGATTTTGATTGTTGCGACATTTGTATGCACGCTTTGTATTCCATATTTGAGGAATAAAGATCTCTGGATGCTCAAGTTATGGAAATGGGAGGTGATGGTTTTGGTTCTAATTTGTGGTCGGCTCGTTTCTGATTGGGTAATCCGAATAGTTGTGTTCTTTATCGAAAGGAATTTCCTTTTGCGTAAGAGGGTCCTCTATTTTGTTTATGGGGTGAGGAAGGCAGTTCAAAATTGCCTATGGTTGGGTCTTGTCTTAACTTCCTGGCATTTTCTATTTGATCAGAGAGTTCAGAGGGAGACTGAAAATGACTTACTTGAATATGTCACCAAGGTGTTGGTCTGTTTCTTGGTGGGTACTTTGGTATGGTTGGTAAAGACTCTTATGGTTAAGGTACTGGCTTCTTCTTTCCATGTAAGCACCTACTTCGATAGGATTCAGGAATCGTTGTTTAATCAGTTTGTTATTGAAACACTTTCGGGGCCACCATTGGTCGAAATTCGAAGGTTAGAGGAAGAAGAAGATAAGCTTGCTGATGAGGTTCGGAAGCTGCAGAATGCTGGGGCTACCATACCCCCTGAACTCAAGGCGTCTGCCTTTGCTTCAATCAAGAGTACAAGGGTGTCCAGGAGTGGAATGCTTCAGATAAGCCCTCAGCTGAAAAGTGCAAGATTTTCTCGGCCACTTTCCAAGAAGTCGGATGATGGGAATGCGATAACTATTGATCACTTGCATAAGTTAAATCCGCAAAATGTCTCTGCTTGGAATATGAAAAGGTTAATGAATATTGTGCGTCATGGGGCTCTTTCTACACTGGATGAACAGATACTTGATTCAGCTCATGATGATGAACCTACCAGACAAATTAGAAGTGAAAATGAGGCAAAAGCTGCAGCAAAGAAAATATTTCAGAATGTTGCTAGGCGGGGATCCAGGTACATATCCCTGGACGACTTGTTGCGTTTTATGAGAGAAGATGAAGCTATCAAAACCACGAGTCTCTTCGAAGGAGCGTCTGACACTGGGAAAATCAGCAAAAGAGCCCTGAAGAACTGGGTGGTTAATGCGTTTAGAGAGAGGAGAGCACTTGCTTTGTCATTGAATGATACGAAAACGGCAGTAAACAAGCTTCATCGAATGCTCAATTTTTTAGTCGCCATTATTATACTGGTTATTTGGCTCTTAATATTGGAAATCGCCACCAGCAAATTTCTTCTTTTTGTGAGCTCCCAGCTCGTATTGGTTGCCTTTATATTTGGAAACACCTGCAAGACCGTATTTGAAGCAATTATTTTCTTATTCGTCATGCATCCATTTGATGTGGGAGATAGGTGTGAAATTGATGGGATCCAGATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGACAATTTGAAGATCACAATCCCCAACAGCGTTCTTGCTACTAAGGCCATAAATAATTACTACCGGAGTCCAGATATGGGAGATGCTGTTGAGTTCTGTGTACATGTAACTACCCCAGCTGATAAGATTGCACTTATGAAACTCAAATTAGTGAGTTACATCGAAAGCAAGAAGGAGCACTGGTATCCTTCACCCTTTATAGTGTTTAAGGATCATGAGCAACTGAACATGATAAGAATGGCGATTTGGCCAACTCATAGAATGAACCACCAAGACATGGGAGAAAGATATATTAGAAGATCCCTTTTGATTGAAGAGATGATCAAGATTTTCCGGGAGATTGACATTCAGTACCGACTCCTTCCTCTTGATATTAGCATTAGAAACATGCCAACCGCTTCTGATCGCCTTCCACCTAGTTGGGCCACAGCCACAAGTTGA 2847 0.438 MDFSLKKSLKSYTSGKHSRKISAAGDDEFVREELPILFDQESSADPPPPPQDSHCDFSSSMTSTSPSHRGEVIVKIDEGDSKAAAGAVHGCKIWRGSSYEFWKDEDVSTDAGTQGGSFGFQQPAQDMEDPPSKLIGKFLHNQKLSGGMTLDMDLEMEELQNDMNMPWVDESPSPTANRFSKELKVSFEDPPSNVVEEANDSVRRRYNKESALNEEFKKPPQPPHHDRRGSPQAGYNGGGDAEVVRCTSNASFERNISLQRKSGLMRAKTRSRLMDPPSEELERKSERVPKSGQMFSGLMGKKGDEEEDDPFLEEDLPNEFKKTKFSIWILLEWLSLILIVATFVCTLCIPYLRNKDLWMLKLWKWEVMVLVLICGRLVSDWVIRIVVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLTSWHFLFDQRVQRETENDLLEYVTKVLVCFLVGTLVWLVKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRRLEEEEDKLADEVRKLQNAGATIPPELKASAFASIKSTRVSRSGMLQISPQLKSARFSRPLSKKSDDGNAITIDHLHKLNPQNVSAWNMKRLMNIVRHGALSTLDEQILDSAHDDEPTRQIRSENEAKAAAKKIFQNVARRGSRYISLDDLLRFMREDEAIKTTSLFEGASDTGKISKRALKNWVVNAFRERRALALSLNDTKTAVNKLHRMLNFLVAIIILVIWLLILEIATSKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGIQMVVEEMNILTTIFLRYDNLKITIPNSVLATKAINNYYRSPDMGDAVEFCVHVTTPADKIALMKLKLVSYIESKKEHWYPSPFIVFKDHEQLNMIRMAIWPTHRMNHQDMGERYIRRSLLIEEMIKIFREIDIQYRLLPLDISIRNMPTASDRLPPSWATATS 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0044 948 MobiDBLite consensus disorder prediction 1 69 - -
Glsi01g0044 948 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 58 943 IPR016688 -
Glsi01g0044 948 Pfam Mechanosensitive ion channel 715 919 IPR006685 GO:0016020|GO:0055085
Glsi01g0044 948 PIRSF Memb_At2g17000 56 948 IPR016688 -
Glsi01g0044 948 MobiDBLite consensus disorder prediction 20 35 - -
Glsi01g0044 948 MobiDBLite consensus disorder prediction 210 225 - -
Glsi01g0044 948 Coils Coil 502 525 - -
Glsi01g0044 948 Gene3D - 773 822 IPR023408 -
Glsi01g0044 948 ProSiteProfiles EF-hand calcium-binding domain profile. 629 664 IPR002048 GO:0005509
Glsi01g0044 948 MobiDBLite consensus disorder prediction 210 242 - -
Glsi01g0044 948 MobiDBLite consensus disorder prediction 54 69 - -
Glsi01g0044 948 FunFam Predicted mechanosensitive ion channel 773 822 - -
Glsi01g0044 948 SUPERFAMILY Sm-like ribonucleoproteins 763 822 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0044 Glsi-ChrGlsi01 499614 503448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0044 63 948 Mechanosensitive Ion Channel Family AT1G78610 56.957 0.0 954