Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0043 ATGGGGATGGATCATGATGACCAGACCACTGCAAGTAGCGTGCACGATGCGTCCTCGCTGGCTCAAAGTTGTCAGAAGATGCAGAAGCTTCAAGTGTACAATGAGGTTCTTCGTCGCCTCAAGAATTCCAACAACGGCGAGGCTTTGCAACCTGACTTCGACCATCAACTTTGGGATCACTTCAACCGCTTTCCAACCCGGTATGCGCTGGATGTGAATGTGGAAAGGGCGGCAGATGTTCTCATGCACAAGAGGTTACTGCATTTGGCACACGATCCTGCTAATAGGCCTGCAATTGAAGTTCGCCTAGTCCAGGTTTATCCCATATCAGATGGAAATGCAGCTGACACTGTCCATTCAGATGTTCCTGGGGAAGAAGCTGGTCAAAACTTTTCAAAGTACTCAAGCAGACAGAGTATACATCCTCCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCCCTGGAACTTGATGCAAGTAAGTTTGAAGATCTAGAGGAGGAACACTCTGTACATGCCAGTGCTAAATATTCACAGCCCATGCATGAAATCACCTTCTGCACAGATGACAAGCCAAAGCTTCTCAGTCAGTTAACTTCTTTGATGGCTGAAATTGGACTCAACATCCAAGAAGCACATGCTTTTTCCACTACTGATGGTTACTCCTTAGATGTGTTTGTTGTTGATGGATGGCCCTACGAGGAAACGGAGCTGCTTAAAGCTGCTTTGGAAAAACAAGTTTTGATGATTGAGGGTCTGGCATGGCCTGTTCAGAAATCAGAATCTTCTGTTGGCAGGCCTGATCAAGCAGGGATGAAATGTGAACCAGAATATTTAACAATACCAAATGATGGGACAGATGTTTGGGAAATAGAACCTAAACATTTGAAGTATGGAAATAAAATTGCATCTGGGTCATTTGGTGAACTGTTTAAAGGTACATATTGTAGTCAGGAAGTGGCCATTAAAGTTCTCAAGGCTGAGCATGTAAGTTCAGATTGGCAGAGAGATTTTGCCCAAGAAGTCTTTATCATGAGAAAGGTTAGACACAAGAATGTTGTACAGTTTATTGGAGCATGTACAAAGCCACCACAGTTGTGCATAATAACAGAATTTATGTCTGGTGGAAGTGTGTATGACTACTTGCATAAGCAGAAGGGTGTTTTTAAATTTCCATCCCTGCTCAAAGTAGCAATTGATGTTTCTAAGGGAATGAGCTATTTGCACCAAAATAACATAATCCATAGAGATTTGAAGGCTGCCAATCTTTTGATGGATGAAAATAATGTTATCAAGGTTGCTGATTTTGGGGTTGCAAGAGTGAAAGTTCAATCTGGAGTTATGACTGCAGAGACTGGAACATATAGATGGATGGCTCCTGAGGTTATAGAACACAAGCCATACGATCACAAGGCTGATGTATTTAGTTTTGGAGTTGTTTTATGGGAGCTGCTCACTGGAAAGCTTCCATATGAATATTTGACCCCACTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTCTACGACCCACCATCCCCAAGAACGCACATCCAAAATTTGCTGAGCTTCTTGAGAGGTGTTGGCAGCAAGAACCGACATTAAGACCTGATTTCTCTGAAATTATTGAGATCCTGCAGCAGTTAACGAAGGAGGTTGTAGATGAAGGAGAGGAGAAGCGGAGGGAGAAATCTGGAGGACTTTTCTCTGTCCTGAGACGAGGTCATCACTGA 1731 0.4333 MGMDHDDQTTASSVHDASSLAQSCQKMQKLQVYNEVLRRLKNSNNGEALQPDFDHQLWDHFNRFPTRYALDVNVERAADVLMHKRLLHLAHDPANRPAIEVRLVQVYPISDGNAADTVHSDVPGEEAGQNFSKYSSRQSIHPPPAFGSSPNLEALELDASKFEDLEEEHSVHASAKYSQPMHEITFCTDDKPKLLSQLTSLMAEIGLNIQEAHAFSTTDGYSLDVFVVDGWPYEETELLKAALEKQVLMIEGLAWPVQKSESSVGRPDQAGMKCEPEYLTIPNDGTDVWEIEPKHLKYGNKIASGSFGELFKGTYCSQEVAIKVLKAEHVSSDWQRDFAQEVFIMRKVRHKNVVQFIGACTKPPQLCIITEFMSGGSVYDYLHKQKGVFKFPSLLKVAIDVSKGMSYLHQNNIIHRDLKAANLLMDENNVIKVADFGVARVKVQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGVVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNAHPKFAELLERCWQQEPTLRPDFSEIIEILQQLTKEVVDEGEEKRREKSGGLFSVLRRGHH 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0043 576 CDD ACT_TyrKc 181 248 - -
Glsi01g0043 576 FunFam Serine/threonine-protein kinase isoform 1 286 374 - -
Glsi01g0043 576 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 129 553 - -
Glsi01g0043 576 ProSiteProfiles Protein kinase domain profile. 296 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0043 576 CDD STKc_MAP3K-like 302 545 - -
Glsi01g0043 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Glsi01g0043 576 PRINTS Tyrosine kinase catalytic domain signature 370 383 IPR001245 GO:0004672|GO:0006468
Glsi01g0043 576 PRINTS Tyrosine kinase catalytic domain signature 472 494 IPR001245 GO:0004672|GO:0006468
Glsi01g0043 576 PRINTS Tyrosine kinase catalytic domain signature 453 463 IPR001245 GO:0004672|GO:0006468
Glsi01g0043 576 PRINTS Tyrosine kinase catalytic domain signature 407 425 IPR001245 GO:0004672|GO:0006468
Glsi01g0043 576 PRINTS Tyrosine kinase catalytic domain signature 516 538 IPR001245 GO:0004672|GO:0006468
Glsi01g0043 576 MobiDBLite consensus disorder prediction 116 149 - -
Glsi01g0043 576 Pfam Protein tyrosine and serine/threonine kinase 296 545 IPR001245 GO:0004672|GO:0006468
Glsi01g0043 576 SUPERFAMILY ACT-like 181 245 IPR045865 -
Glsi01g0043 576 FunFam serine/threonine-protein kinase HT1 375 565 - -
Glsi01g0043 576 SUPERFAMILY Protein kinase-like (PK-like) 281 545 IPR011009 -
Glsi01g0043 576 SMART serkin_6 296 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0043 576 Gene3D Transferase(Phosphotransferase) domain 1 375 567 - -
Glsi01g0043 576 MobiDBLite consensus disorder prediction 129 145 - -
Glsi01g0043 576 Gene3D Phosphorylase Kinase; domain 1 286 374 - -
Glsi01g0043 576 ProSiteProfiles ACT domain profile. 183 262 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0043 Glsi-ChrGlsi01 488514 495814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0043 25 575 MAP Kinase Kinase Kinase AT4G35780 64.791 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi01g0043 PK_Tyr_Ser-Thr 7.5e-75 CL0016