Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi01g0039 | ATGGAGGCTGTCTTCCTCACCAAACCTGCTTCCCCCCTCAATCTCTGTACCAAACATCAACATTCCTTTCCTTCTTCTTTTTCTTTTCACATTCAATCTCTTCGGCCTCAACCAACCCAGAGCTCCCTATTCACTGTCTGCGCCATCCAAAACCAAGAAAAACAAATCTTTCAGGAAACGCCTCCCGCCGATCAATCCACGAAGTACGTTGAGAACGATGATGAATCATACGGTGAAGTTAAAGGGATCATCGGTAGCAGAGCCCTGGAGGGTGGTACCGCCATGGAGTACTTGATCGAGTGGAAAGACGGCCATGCCCCTTCCTGGGTCCCCTCCGATTTCATTGCCAAAGATGTGGTGGCCGAGTACGAGACTCCATGGTGGACTGCCGCAAAGAAAGCCGACGATTCGGCTCTCCAGAAGCTCATCAACGCCGACGACGACCGTGACATCGACGCAGTCGATAGCGATGGGCGAACTGCTCTTCTGTTCGTATCGGGGCTCGGGTCGGAGGCATGCGTGAAGATGCTAGCCGAAGCAGGCGCCAATTTGGACCACCGTGAGAATAGTGGGGGCTTGACGGCACTTCACATGGCGGCTGGATACGTGAAGCCCGGTGTAGTGAAGCTTCTGGTGGAGCTAGGTGCGGATGTTGAGGCGGTGGACGATAGGGGACGGACGCCGTTGGAATTGGCGAAGGAGATTCTGAAGGCGACGCCTAAAGGAAACCCAATGCAGTTTGGGAGGAGGATAGGGCTAGAGAGTGTGATCAGGGCGTTGGAGGAGGCAGTATTCGAGTTCGCGGAGGTGCAGGAGATTTTGGAAAGGAGAGGGAAAGGGGAAAACCTCGAGTATTTAGTGAGATGGAAAGATGGTGGGGCCAACGAGTGGGTGAAGGCGAGGTTTATAGCCGAGGATTTGGTTAGAGATTATGAGGCAGGGGTGGAATATGCAGTGGCAGAGGCAGTGCTGGGAAGAAGAGTCGGGGACGAAGGGAAGCCGGAATTCCTGGTAAAATGGGCCGACATGGATGAGCCCACATGGGAGCCCGAGGACAATGTGGATCCTGAACTCGTTAGAGAATTTGAAGAAGCCCAACATGGCCCATGA | 1110 | 0.5378 | MEAVFLTKPASPLNLCTKHQHSFPSSFSFHIQSLRPQPTQSSLFTVCAIQNQEKQIFQETPPADQSTKYVENDDESYGEVKGIIGSRALEGGTAMEYLIEWKDGHAPSWVPSDFIAKDVVAEYETPWWTAAKKADDSALQKLINADDDRDIDAVDSDGRTALLFVSGLGSEACVKMLAEAGANLDHRENSGGLTALHMAAGYVKPGVVKLLVELGADVEAVDDRGRTPLELAKEILKATPKGNPMQFGRRIGLESVIRALEEAVFEFAEVQEILERRGKGENLEYLVRWKDGGANEWVKARFIAEDLVRDYEAGVEYAVAEAVLGRRVGDEGKPEFLVKWADMDEPTWEPEDNVDPELVREFEEAQHGP | 369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi01g0039 | 369 | Gene3D | - | 264 | 313 | - | - | |
| Glsi01g0039 | 369 | Gene3D | - | 75 | 121 | - | - | |
| Glsi01g0039 | 369 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 320 | 364 | IPR023780 | - | |
| Glsi01g0039 | 369 | ProSiteProfiles | Ankyrin repeat profile. | 157 | 189 | IPR002110 | GO:0005515 | |
| Glsi01g0039 | 369 | SUPERFAMILY | Ankyrin repeat | 123 | 234 | IPR036770 | - | |
| Glsi01g0039 | 369 | PANTHER | MYOTROPHIN | 79 | 238 | - | - | |
| Glsi01g0039 | 369 | SMART | ANK_2a | 191 | 220 | IPR002110 | GO:0005515 | |
| Glsi01g0039 | 369 | SMART | ANK_2a | 122 | 151 | IPR002110 | GO:0005515 | |
| Glsi01g0039 | 369 | SMART | ANK_2a | 157 | 186 | IPR002110 | GO:0005515 | |
| Glsi01g0039 | 369 | SUPERFAMILY | Chromo domain-like | 316 | 365 | IPR016197 | - | |
| Glsi01g0039 | 369 | ProSiteProfiles | Ankyrin repeat profile. | 191 | 223 | IPR002110 | GO:0005515 | |
| Glsi01g0039 | 369 | Gene3D | - | 314 | 366 | - | - | |
| Glsi01g0039 | 369 | MobiDBLite | consensus disorder prediction | 353 | 369 | - | - | |
| Glsi01g0039 | 369 | Pfam | Ankyrin repeats (many copies) | 177 | 232 | IPR002110 | GO:0005515 | |
| Glsi01g0039 | 369 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 318 | 369 | IPR000953 | - | |
| Glsi01g0039 | 369 | SMART | chromo_7 | 76 | 128 | IPR000953 | - | |
| Glsi01g0039 | 369 | SMART | chromo_7 | 317 | 367 | IPR000953 | - | |
| Glsi01g0039 | 369 | SMART | chromo_7 | 266 | 316 | IPR000953 | - | |
| Glsi01g0039 | 369 | MobiDBLite | consensus disorder prediction | 344 | 369 | - | - | |
| Glsi01g0039 | 369 | ProSiteProfiles | Ankyrin repeat region circular profile. | 191 | 223 | - | - | |
| Glsi01g0039 | 369 | Gene3D | - | 122 | 263 | IPR036770 | - | |
| Glsi01g0039 | 369 | CDD | CD3_cpSRP43_like | 315 | 363 | IPR030300 | - | |
| Glsi01g0039 | 369 | SUPERFAMILY | Chromo domain-like | 73 | 127 | IPR016197 | - | |
| Glsi01g0039 | 369 | SUPERFAMILY | Chromo domain-like | 266 | 314 | IPR016197 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi01g0039 | 152 | 232 | CAMTA Transcription Factor Family | AT5G09410 | 36.782 | 2.03e-06 | 47.8 |