Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0033 ATGGAAGGGCAAGTTGTGATGTCAAGATTCAAGAGAGTTTGTGTATTCTGTGGTAGCAGCACCGGCAAAAGGAATTGCTACAGAGACGCTGCCGTTGAACTGGGACAAGAGTTGGTATCCCGGGGTTTGGATCTTGTTTACGGCGGTGGGGGTATAGGGTTAATGGGGCTTGTTTCCCAAGCTGTTCATCGGGGCGGAGGAAATATAACTGGTGAAACTGTTGGGAAGGTGGGTCTGCTCAATGTTGATGGCTACTACAACTACCTTCTTACGTTCATTGACAAAGCCGTGGATGATGGGTTTATCAAGCCGTCCCAGCGCCACATAATAGTCTCTGCTCCGAATGCTAAAGAGCTTGTTCAAAAACTGGAGGATTACGTGCCTGTGCATGATGGAGTGATAGCAAAGGCAAAGTGGGAGGTTGAGCTGAAGCAGCAGCAGCAGCAGCAACAGTTTATAATCTTGGAAGATGATGGGGGGATGGTCACAGATGAGTGGGCAGCGATGATGTATTTTGTAGCATTGTGTGTGGGTGGTGGTCCCTATTCTTTTGGCAAAAGCCGAATGATTATTGATGATAAAATGAGCTTCAGCAAGTGCCGCCCTTCATGCCTTGTCCCAAGGCCCTCTCATAACTATGCCTTCACTGGGCAAATGGAGCTTCCAGGCTTCCGATTTCACCCCACCGAAGAAGAACTCCTTGATTTCTATCTCAAAAACATGATCACTGGGAAGAAACTGTGCTTCGACATCATTGATTTCATCAACATCTATCACCATGATCCTTGGGATTTACCTGGTCTGGCAAAGGTGGGGGAAAGAGAATGGTACTTCTTCGTGCCAAGAGACAAGAAGCATGGCAGTGGGGGAAGGCCTAACCGAACCACCCAAAAGGGGTTTTGGAAAGCCACCGGCTCTGACCGCAAAATCCTCAGCTTATCGGACCCAAAGCGGGTCATTGGGCTGAGGAAGACATTGGTTTTCTACAAGGGAAGAGCTCCGAGGGGATGCAAGACCGATTGGGTTATGAATGAGTACCGTTTGCCTGACACTCGGCATTTTCCAAAACAGGACATTGTGTTGTGCAAGATTTACAGAAAAGCAACTTCTTTCAAAGTGTTGGAGCAAAGGGCAGCCATGGAGGAAGAGATGAAGAAATTGGGTGGCCGTGGCTCCCCTTCCTCTCCTTCTTCCTCAGCCCACCTCACCCCTACCCAACCTAAGACTGAAGCTGTGGAAGAAGTGGCGCTACCCCAGGATATTACTAACCAATTGCCTGTCAAAGACAAAGCGAGCAATTGTTTGAAGAAGGAGAATCTTCCGGAGCTCCAAGTACCGATGATGAGCATGGACTGGACCCAAGATCCGTTTTGGACTCAATTAAACAGTCCTTGGTTGCAATGTCTGACTCCTTACGCCAACATCTTAAATTTCTAA 1437 0.4816 MEGQVVMSRFKRVCVFCGSSTGKRNCYRDAAVELGQELVSRGLDLVYGGGGIGLMGLVSQAVHRGGGNITGETVGKVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRHIIVSAPNAKELVQKLEDYVPVHDGVIAKAKWEVELKQQQQQQQFIILEDDGGMVTDEWAAMMYFVALCVGGGPYSFGKSRMIIDDKMSFSKCRPSCLVPRPSHNYAFTGQMELPGFRFHPTEEELLDFYLKNMITGKKLCFDIIDFINIYHHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTQKGFWKATGSDRKILSLSDPKRVIGLRKTLVFYKGRAPRGCKTDWVMNEYRLPDTRHFPKQDIVLCKIYRKATSFKVLEQRAAMEEEMKKLGGRGSPSSPSSSAHLTPTQPKTEAVEEVALPQDITNQLPVKDKASNCLKKENLPELQVPMMSMDWTQDPFWTQLNSPWLQCLTPYANILNF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0033 478 Gene3D - 3 71 - -
Glsi01g0033 478 MobiDBLite consensus disorder prediction 391 406 - -
Glsi01g0033 478 Pfam Possible lysine decarboxylase 77 123 IPR031100 -
Glsi01g0033 478 FunFam NAC domain-containing protein 67-like 229 371 - -
Glsi01g0033 478 Gene3D NAC domain 229 372 IPR036093 GO:0003677|GO:0006355
Glsi01g0033 478 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 220 419 - -
Glsi01g0033 478 SUPERFAMILY MCP/YpsA-like 7 124 - -
Glsi01g0033 478 ProSiteProfiles NAC domain profile. 220 367 IPR003441 GO:0003677|GO:0006355
Glsi01g0033 478 Gene3D - 72 142 - -
Glsi01g0033 478 MobiDBLite consensus disorder prediction 384 410 - -
Glsi01g0033 478 SUPERFAMILY NAC domain 216 367 IPR036093 GO:0003677|GO:0006355
Glsi01g0033 478 Pfam No apical meristem (NAM) protein 222 348 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0033 Glsi-ChrGlsi01 416201 422548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0033 219 475 NAC Transcription Factor Family AT2G17040 56.631 2.17e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi01g0033 NAM 3.1e-34 No_clan