Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0019 ATGACCAACTCCGATTCTCCTACTGCTACTACTCTATCCACTGTCGTTGCTGCTTCTACCTCAACCGCAAGCAGCGGTCTCAAATACCAGTCTCGACCAAGAAAGAAGCGCTCCACCAAAATGATCACCATCATCGACCATAACGTCACTTTCAAGCCCAAGTATGGAAACAAACCCGACCCAGGTGCACCTATGATTACCAGGCCATGCACCGAGTGTGGCAAGAAGTTCTGGTCATGGAAGGCTCTGTTTGGCCACATGCGCTGCCATCCTGAACGTCAATGGCGCGGCATTAACCCACCGCCCAATTTCCAACGGCAACCTCCGGAGAAGCGAATACAAGGATTGATGACCCAAGAGGACCACGAGGTCGCGGCTTGTCTGCTATTGCTAGCCAATTCAACCGACACTCCCAGCGGTTTGAATTGTGGGTTCGAGTGCTCGAGTTGCAAGAAGGTTTTTGGGTCACACCAGGCTCTGGGAGGGCATAGGGCTAGTCACAAGAACGTGAAGGGTTGTTTTGCGATAACAAGGAGCGATGACGAGGTTGTCGTGGAAGAGCAGAATGATGAGAGCGAGATGGCGATGGCTTTGGAAGGGCACAAGTGCAGCATTTGTATGAGGGTGTTTTCTAGTGGGCAAGCGCTGGGTGGGCACAAGAGATGTCACTGGGAGAAAGGAGAAGCGTCCAACTCGGCCAAGGAAGAATATGGTGTTGACTTGAATTTGCCTGCCCCACTTGAATACTCTTCGCCCCTCACTCTGGATTTGAGGTTTTTGGAGATTCGTGGCGTCAATGAATTCACCAATGAAACACAGGAGAATCTCTTTCACGGCCTCAACTTGGATGTTAAACGCTTAAAAAATTACTCAAATTTCCCAAGTCACACTGACAAGACATGGGATGACATCCAAACGTCATTAGCTTTTCCAACACTTTCCATTTCCAGTTCTCTGTCTTGCTCACTCACTACGCCCAAGCCAGAGTTCTCCCACAATCTTCTAAAGGGTGTAACGTATATAGCATCTGTCGGAGAGAAACGGGAAGCTACAACTAACATGGAATATGGTGCCTTGCTGCACAATCCTGCATTTGAGACCATGTCGGACACTGCCTCAGAAGTGGATCTCATGGATGAGCTCTTTGTTCAAGGTTGCTGGCTGGAAACCACTGGCGGATACAACTTCACGCAGCTTTGTCCTACGATTTCCCATTCTCTCACTGATCCTTTACATTATTTGCCACCGTCAGACCCAAATCAGCAAATCTATCAAGAAGAATCAGAGGGAACTTTTGCATTCCAATTAGAAAGTTTTCTGGTTGAAAGCACTGAAGTGGGCAAAAGATGGTGGATTGGACCAAGGGCAAATCCTGGTCCATCTTCCTCAGTCAAAGAAAGATTAGTGCTTGTAGTTGGGTACTTAAAAGAATACACCAAAAATACGAATGTGCTTATTCAAATTTGGGTACCCATAAGAAGAGAGGGAAGATACGTTCTTAACACTCACGATCAGCCATACTCAATTGATCAAAGTGGCATGACTCTTGAATACTACAGAAATGTTTCGAGAGCTTATCAATTTGCAGCTGAGGAGGATTTTGAAGACTCCGTTGGATTGCCGGGTAGATATGATGTTCGTGGATCTTTTGCCTTTCCTGTCTTTGAGCGAGGCAGTGGGACATGTCTAGGTGTTGTTGAGATTGTAATGACCAATCAGAAGATCAACTACCGCCCCGAACTTGAGAATGTCTGCCATACTCTCGAGGTTTTTGACGAGTTGTACCAAGCCGCATTAAATGAGATAGTAGAGGTATTGACATGTGTGCGCAAGACGCATAATTTGCCATTGGTTCTGACATGGGCTCCCTGCATCCAACAAGGTAAGAGTGGGTGTGGGCATTCAAGTGAGAGTTATGTGTGCTGTTTGTCCACTGTGAGTTCTGCTTGTTATGTGGCGGATCTAGACATATTAGGCTTCCAGGAAGCGTGCTCTGAGTGCCACCTTTTTGGAGGGCAAGGCATTGTTGGGACAGCTTTCACAACAACCAAACCATGTTTTGCGACTGACATAACTGCCTTTAACAAAACTGAATACCCTCTGGTTCACCATGCTGGCATGTTTGGGTTGCATGCTGCTGTGGCTATTCCCCTCCGAAGTGTCTATACCGGATCATCTGATTTCGTCTTGGAATTTTTCTTACCAAAAGATTGCCATGATAGAGAAGAACAAAAGCAGATGCTGAATTCATTATCTGTGGTGGTACAGCAAACTTGCCGGAGTTTACATGTGGCCATTGAGGAAGAATTCACGTTTACAGTTCGAGAAATGTTGGCTCCTTCAGAAGAACCATCTTCAAAAGAATCGTCTTGGATTGCGCATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTCTCCTTGGAATACCTGGAAGAACCGAAACAAGAGTTCAAAGTGACAGCCAACTGGGGTAGCACTCACGCAGGATTATGCGATGGAGATTTTGGACAACTTCAGCACAGCTCTGCATCCAGAGGCAGTGTAGAGGGTGGAGGAGAATCTTACACTTTTGGTGGACGCCGCTTGTCAGGGGGCAGAAAATCAGGCGAGAAGAGACGAATCAAAGCAGAGAAGACTATCGGCTTGTCAGTTCTTAGGCAATACTTTGCAGAAAGCCTTAAAGATGCTGCCAAGTGCATCGGCGTATGTCCCACGACGCTTAAAAGGATATGCAGAAAACATGGAATCACCAGGTGGCCTTCAAGGACAATAAAGAAGGTGGGTCACTCTTTAAGGAAACTTCAACTTGTGATCGATTCTGTCCAGGGAGCTGAAGGTGCCATTCAGATTGGGTCCTTCTATTCAAGCTTTCCAGAGTTGAGCTCTACAGATTTGTCCGCGGGTGATCCTTCTAAATCATCCAAAATCAGTGACCATTCTAAGCAAATGCATCCTCATCCTGAGAATGTCTTAAATATCCAAGGAGCCCCGACTTTAAAATCCTCACCCTCTTCTTGCAGTCAAACTTCTGGTCCAACCATCTCTTGTGCTACTGGACGAAAACTACCTTCCCCCATCATCAATGCCAATGCCGTATCTAATGGAGATGTTGTAATGACAGAAAACCCAGATGGGTTGGATACAAAACATCTCACTAGATCCAAAAGCCAGAAACCATTTAGTGAGCATCCTAGTCTTGAGGCTTTACCTCCCTTGCCTGAAAATAGTGGCTGGAATTCACGAGATGGGGGTGCTTTTAGAGTCAAAGCTACTTTTGGGGCTGAAAAAATCCGTTTTAGCTTGCAACCAAACTGGGGCTTTAGAGAGTTGCGGCTGGAGATTGCAAGACGCTTCAATCTAAATGATGTTAGCAACATTGATATCAAGTATTTGGATGATGATGACTTTCCTTTCTTGATGATTTTGAGGCTTGGTGCAAGAAAATTGAGGAGGTCGTACAGATTAACATTCTCTTTTTCAGCAGATGTTCTCTTGCAAGGAGTGAAGGTGCTAGATGACATATCATGCTCATTTTCTCCCATTTTTGAATATATGTCCTGCATATTATATGATTCAATGAAAGATGTTAATTTTTTGAAGGACTTGAAAGCCAGTATGGAGGAGTGCTGTGGTATTAATTGTTTTCTAGTGACATGCTTAGCTGAAGGAGATATGGTTTCCCAACACCATATAAACAGAACATCAATAGATCTCAATGAAAACATAGCAGATCTAAGCAGAAAAGCACCAGATGCTAATGGAAATTGA 3774 0.4534 MTNSDSPTATTLSTVVAASTSTASSGLKYQSRPRKKRSTKMITIIDHNVTFKPKYGNKPDPGAPMITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNFQRQPPEKRIQGLMTQEDHEVAACLLLLANSTDTPSGLNCGFECSSCKKVFGSHQALGGHRASHKNVKGCFAITRSDDEVVVEEQNDESEMAMALEGHKCSICMRVFSSGQALGGHKRCHWEKGEASNSAKEEYGVDLNLPAPLEYSSPLTLDLRFLEIRGVNEFTNETQENLFHGLNLDVKRLKNYSNFPSHTDKTWDDIQTSLAFPTLSISSSLSCSLTTPKPEFSHNLLKGVTYIASVGEKREATTNMEYGALLHNPAFETMSDTASEVDLMDELFVQGCWLETTGGYNFTQLCPTISHSLTDPLHYLPPSDPNQQIYQEESEGTFAFQLESFLVESTEVGKRWWIGPRANPGPSSSVKERLVLVVGYLKEYTKNTNVLIQIWVPIRREGRYVLNTHDQPYSIDQSGMTLEYYRNVSRAYQFAAEEDFEDSVGLPGRYDVRGSFAFPVFERGSGTCLGVVEIVMTNQKINYRPELENVCHTLEVFDELYQAALNEIVEVLTCVRKTHNLPLVLTWAPCIQQGKSGCGHSSESYVCCLSTVSSACYVADLDILGFQEACSECHLFGGQGIVGTAFTTTKPCFATDITAFNKTEYPLVHHAGMFGLHAAVAIPLRSVYTGSSDFVLEFFLPKDCHDREEQKQMLNSLSVVVQQTCRSLHVAIEEEFTFTVREMLAPSEEPSSKESSWIAHMMEAQQKGKGVSVSLEYLEEPKQEFKVTANWGSTHAGLCDGDFGQLQHSSASRGSVEGGGESYTFGGRRLSGGRKSGEKRRIKAEKTIGLSVLRQYFAESLKDAAKCIGVCPTTLKRICRKHGITRWPSRTIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPELSSTDLSAGDPSKSSKISDHSKQMHPHPENVLNIQGAPTLKSSPSSCSQTSGPTISCATGRKLPSPIINANAVSNGDVVMTENPDGLDTKHLTRSKSQKPFSEHPSLEALPPLPENSGWNSRDGGAFRVKATFGAEKIRFSLQPNWGFRELRLEIARRFNLNDVSNIDIKYLDDDDFPFLMILRLGARKLRRSYRLTFSFSADVLLQGVKVLDDISCSFSPIFEYMSCILYDSMKDVNFLKDLKASMEECCGINCFLVTCLAEGDMVSQHHINRTSIDLNENIADLSRKAPDANGN 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0019 1257 SMART PB1_new 1087 1170 IPR000270 GO:0005515
Glsi01g0019 1257 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
Glsi01g0019 1257 MobiDBLite consensus disorder prediction 966 1014 - -
Glsi01g0019 1257 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Glsi01g0019 1257 Pfam RWP-RK domain 882 929 IPR003035 -
Glsi01g0019 1257 MobiDBLite consensus disorder prediction 1055 1076 - -
Glsi01g0019 1257 MobiDBLite consensus disorder prediction 996 1014 - -
Glsi01g0019 1257 Pfam C2H2-type zinc finger 201 225 - -
Glsi01g0019 1257 Pfam C2H2-type zinc finger 69 92 - -
Glsi01g0019 1257 Pfam C2H2-type zinc finger 145 168 - -
Glsi01g0019 1257 Pfam PB1 domain 1088 1137 IPR000270 GO:0005515
Glsi01g0019 1257 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Glsi01g0019 1257 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Glsi01g0019 1257 SUPERFAMILY CAD & PB1 domains 1084 1137 - -
Glsi01g0019 1257 Gene3D Classic Zinc Finger 143 224 - -
Glsi01g0019 1257 Gene3D - 1086 1142 - -
Glsi01g0019 1257 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Glsi01g0019 1257 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Glsi01g0019 1257 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 172 IPR013087 -
Glsi01g0019 1257 PANTHER PROTEIN NLP8 445 543 IPR045012 GO:0003700
Glsi01g0019 1257 SMART c2h2final6 145 167 IPR013087 -
Glsi01g0019 1257 SMART c2h2final6 68 90 IPR013087 -
Glsi01g0019 1257 SMART c2h2final6 201 223 IPR013087 -
Glsi01g0019 1257 ProSiteProfiles RWP-RK domain profile. 868 949 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0019 Glsi-ChrGlsi01 304709 325045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0019 359 1136 NLP Transcription Factor Family AT4G35270 44.676 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Glsi01g0019 PB1 2.4e-06 CL0072