Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0005 ATGACCATTAATTTATCAGCTCTCGTTACTATTATCTTTTCATCGCTCACATTCTCGTCGTCTGTTATCATTACAGAAGATTTTGGACTGAACGGTTTGTGTCGATACTCAGTACAAATTGATGACAGATCCTTGGATGAGGAAAAGGGCATAAATAATCTGCGTAATTGTTTCATGGGCAACACATGCCGCGGATCTTTCAAAGTAAAATATTTTCAGGGCTACAGCCGGCCCGAAGACCAATCCGCTGCTCATTCCAAGCGTAACACTCCTTCTGATCCCTCCAACTCGGACTATTCCCCATCTAGCATGAACTACAATATAGACACCAGTAACAGCTCTTATACAGATAACAACAACAGTAATTTACCCTTGATCTTTCCTCCCAAGAAAGACGCCATCATGAGGCGAGGCATCGATAACCAAGCATACTATGTATTGGGTCATAAGACTACCAATATTCGTGATCTATACACTCTTGGCCGTAAATTAGGACAGGGACAATTTGGGACCACATATTTATGCACAGAAAATTCCACGGGTATTGAATATGCATGTAAATCAATCTCGAAGAGGAAGTTGATCTCCAAGGAGGATGTGGAGGATGTTCGGAGGGAAATTCAGATAATGCACCATCTAGCAGGTCACAAGAATATTGTCACCATTAAAGGTGCTTATGAGGATCAATTGTGTGTGCATATTGTGATGGAGCTTTGTTCTGGGGGAGAGTTGTTTGATCGCATCATCCAGAGGGGCCACTACAGTGAGAGGAAGGCTGCGGAATTGACCAAAATTATTGTAGGAGTTGTTGAGGCATGCCATTCCCTTGGGGTTATGCATAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTCAACAAAGATGATGATTTCTCTCTTAAAGCAATTGACTTTGGGCTTTCTGTTTTCTTTAAACCAGGTCAAGTTTTCACTGATGTAGTTGGCAGCCCATATTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCAGAAGCAGATGTATGGACTGCGGGTGTGATACTGTACATATTGCTTAGTGGTGTGCCACCGTTTTGGGCAGAAACGCAGCAGGGTATATTTGATGCAGTATTAAAAGGACATCTAGATTTTGAATCTGACCCATGGCCCCTAATATCCGATAGTGCAAAAGATCTGATTCGGAAGATGCTATGTTCTCAGCCTTCAGAACGGTTGACTGCTCATGAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCGGATAGGGCATTGGATCCTGCTGTTCTATCTCGTCTCAAACAATTCTCTGCAATGAATAAGCTAAAGAAAATGGCTTTGCGAGTAATTGCTGAAAGTCTATCTGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTAAGGCTATGGATACTGATAACAGTGGTGCAATTACTTTTGATGAACTCAAAGCTGGTTTAAGAAGATATGGGTCTACCCTCAAGGATACAGAAATACGTGATCTTATGGAAGCGGCTGATGTGGACAATAGTGGAACTATAGATTATGGGGAGTTTATTGCTGCAACAGTTCATCTGAACAAACTAGAGCGTGAGGAACATCTCATTGCAGCGTTCCAATATTTTGATAAGGATGGAAGTGGTTATATTACAGTTGACGAGCTTCAACAAGCCTGTGCAGAACATAACATGACTGATGTTTTTCTCGAAGATATTATTAGGGAAGTTGATCAAGATAATGATGGAAGAATCGATTATGGTGAATTTGTTGCCATGATGCAAAAAGGCAACTTTGGAATTGGAAGGAGGACTATGCGCAACAGTCTGAATTTAAGCATGAGAGATGCCCCAGGTGCTCATTTACTTCCAATATGTACAGGCAGTGCAGCAAAGCCAGAAAGAGAAGAATAA 1914 0.4164 MTINLSALVTIIFSSLTFSSSVIITEDFGLNGLCRYSVQIDDRSLDEEKGINNLRNCFMGNTCRGSFKVKYFQGYSRPEDQSAAHSKRNTPSDPSNSDYSPSSMNYNIDTSNSSYTDNNNSNLPLIFPPKKDAIMRRGIDNQAYYVLGHKTTNIRDLYTLGRKLGQGQFGTTYLCTENSTGIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDQLCVHIVMELCSGGELFDRIIQRGHYSERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHLDFESDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRALDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFVAMMQKGNFGIGRRTMRNSLNLSMRDAPGAHLLPICTGSAAKPEREE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0005 637 Pfam EF-hand domain pair 464 524 IPR002048 GO:0005509
Glsi01g0005 637 Pfam EF-hand domain pair 534 595 IPR002048 GO:0005509
Glsi01g0005 637 ProSiteProfiles EF-hand calcium-binding domain profile. 531 566 IPR002048 GO:0005509
Glsi01g0005 637 FunFam Calcium-dependent protein kinase 1 424 598 - -
Glsi01g0005 637 PANTHER SERINE/THREONINE-PROTEIN KINASE 150 590 - -
Glsi01g0005 637 ProSitePatterns EF-hand calcium-binding domain. 578 590 IPR018247 -
Glsi01g0005 637 SUPERFAMILY Protein kinase-like (PK-like) 140 440 IPR011009 -
Glsi01g0005 637 ProSiteProfiles EF-hand calcium-binding domain profile. 570 600 IPR002048 GO:0005509
Glsi01g0005 637 Gene3D Transferase(Phosphotransferase) domain 1 244 425 - -
Glsi01g0005 637 ProSitePatterns EF-hand calcium-binding domain. 544 556 IPR018247 -
Glsi01g0005 637 Gene3D Phosphorylase Kinase; domain 1 160 243 - -
Glsi01g0005 637 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Glsi01g0005 637 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Glsi01g0005 637 ProSiteProfiles Protein kinase domain profile. 158 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0005 637 Gene3D - 426 598 - -
Glsi01g0005 637 Pfam Protein kinase domain 158 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0005 637 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524
Glsi01g0005 637 FunFam Calcium-dependent protein kinase 1 160 243 - -
Glsi01g0005 637 FunFam Calcium-dependent protein kinase 5 244 424 - -
Glsi01g0005 637 MobiDBLite consensus disorder prediction 78 121 - -
Glsi01g0005 637 ProSiteProfiles EF-hand calcium-binding domain profile. 495 530 IPR002048 GO:0005509
Glsi01g0005 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Glsi01g0005 637 CDD STKc_CAMK 158 415 - -
Glsi01g0005 637 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Glsi01g0005 637 MobiDBLite consensus disorder prediction 87 121 - -
Glsi01g0005 637 SMART efh_1 499 527 IPR002048 GO:0005509
Glsi01g0005 637 SMART efh_1 535 563 IPR002048 GO:0005509
Glsi01g0005 637 SMART efh_1 569 597 IPR002048 GO:0005509
Glsi01g0005 637 SMART efh_1 463 491 IPR002048 GO:0005509
Glsi01g0005 637 SUPERFAMILY EF-hand 440 597 IPR011992 -
Glsi01g0005 637 SMART serkin_6 158 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0005 Glsi-ChrGlsi01 86063 97630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0005 59 617 EF-hand Containing Proteins AT2G17290 83.214 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi01g0005 Pkinase 1.6e-72 CL0016