Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi99g00001 ATGGCTGCAAAAGTTGATGTTATCCGTGATTTGACCCCATCGAAAGAGCAATGGAGAATCAAAGTCAGGGTTATCAGATTGTGGAGGCAACCGAACTTTCATCGACCGGAGATGGGCGAAAATGTGGAGATGGTTCTAATTGATGATCATGGTGGCAAGATTCAGGCTACTGTCCGCGGGTCATTGAGGATAAGAGATCAATTAGCAGAAGGTGGAATGTATGTCATACGTAATTTTGGTGTTGGCCTTAATAATGACAAATTTAAGCCAACACAACATGAGTATAGGCTTACTTTCAATTTGAGAACTGTTGTGACACCGATTGTTGATGCCATTCTTCCTATTAACGGTTTTTCATTCATGGAATTCGAGGATATTGAAAGCTATCCTAATGACACGGCATGTTTAGTAGACGTTATTGGATTTCTCTGCGGAATTGGTGACTCTAAGGAACACATGGTATCTGGAAAGAGGACAAAGATGATAGCTATTGAGCTCGACAATCTTAGGGGAGGGAGACTTAATTGTTCTTTATGGGAGAGCTATGCAGAAGAGCTTATTAAATATAATAGTGAAAATTCAAACAAGCAAACGATCATCATCGTTCAGTTTGCTCGAATGAAAAAGTTTATGGGTAAAATGGGATTGTCTAATACAAAATTTGCTACAAGACTACTTTTCAATGAGGATTGTGCTGAGGTTGAAGCATTCAGATCTAGATTTCCTGATGCACAGTCAGACAGTGCACAGAAACTAATGCAGCATTCAACCCAATCAATTAATTCACAATCAGCTGGTTTTTGGAAAGAATCAGCAGCAAAATTTATTTGTGACATCAAGGATTGTAAGGAGGCTATGACATGTGTTACGTATGGCACAATCAAGGGCATTGAATCTGCTTTTAATTGGTGGTACAAAGGCTGTAAAAAATGTACACATTCAGTCTTTGAAGATTTTGGAAAGTGGTATTGCAGAAATTGTGACATTCATCTGCCTACTTATCATCCAAAGTTCCGTTTGCAAGTAAGGGTTGTTGATGGCACAGACTCTGCTTCGTTTGTTTTGTTTGACAAAGATACAACAAATTTATTATGCCTTTCAGCTGCTGAATTGTGTGAACAACATTTTCAGAGGGGTGGTGACTTGGACAAATACCCTCAAGAGATTGATGCTCTGATCGAAAACTCATATCTTTTTAAGATTAATGTCAAGAAAACTAATATTGATTCTTATGAGGAAAGTGCTTACCAAGTGAGCAGGGTTTGCTCCGATGAGGACATAATTCAATCATTCCTCAACGGTCAAATGGATGGACATGGATCAGTGCATGATGAACAACTTGGTGTACTTGAAAACACTGTTAGCCAAGTAGGGGAGAATTCATCTACTGTTCAAAAGACTTTGCAATTCAACGAAGAACATGAAGACAATGATTATTTGGATGTAACTCCTACCAGCAAACTTTCTGATACTTATCATACAAAAAAAGTTGATGATGCAAATATGGTTTTGGATTTGGTGGCAGTAACTCCTCCTACCAAACAATTAGACTTAAGGAAGACAAAAGCAGTTGAAGATGCAAATTTGGGTACTAATTTGCTGCCAGAAAATCCTGCCAACATATTTGCAGATACAGAAAGCGAAAAACCAGTGGGGGTTGCGGATTTGGTTCCATGTTTGAGACCAACTAAGGCCATAAAGATTGAGAAGGATTGA 1716 0.3858 MAAKVDVIRDLTPSKEQWRIKVRVIRLWRQPNFHRPEMGENVEMVLIDDHGGKIQATVRGSLRIRDQLAEGGMYVIRNFGVGLNNDKFKPTQHEYRLTFNLRTVVTPIVDAILPINGFSFMEFEDIESYPNDTACLVDVIGFLCGIGDSKEHMVSGKRTKMIAIELDNLRGGRLNCSLWESYAEELIKYNSENSNKQTIIIVQFARMKKFMGKMGLSNTKFATRLLFNEDCAEVEAFRSRFPDAQSDSAQKLMQHSTQSINSQSAGFWKESAAKFICDIKDCKEAMTCVTYGTIKGIESAFNWWYKGCKKCTHSVFEDFGKWYCRNCDIHLPTYHPKFRLQVRVVDGTDSASFVLFDKDTTNLLCLSAAELCEQHFQRGGDLDKYPQEIDALIENSYLFKINVKKTNIDSYEESAYQVSRVCSDEDIIQSFLNGQMDGHGSVHDEQLGVLENTVSQVGENSSTVQKTLQFNEEHEDNDYLDVTPTSKLSDTYHTKKVDDANMVLDLVAVTPPTKQLDLRKTKAVEDANLGTNLLPENPANIFADTESEKPVGVADLVPCLRPTKAIKIEKD 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi99g00001 571 SUPERFAMILY Nucleic acid-binding proteins 7 110 IPR012340 -
Gabi99g00001 571 PANTHER OS03G0429900 PROTEIN 7 425 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi99g00001 571 SUPERFAMILY Nucleic acid-binding proteins 274 421 IPR012340 -
Gabi99g00001 571 CDD RPA1_DBD_B_like 138 242 - -
Gabi99g00001 571 Gene3D - 113 252 IPR012340 -
Gabi99g00001 571 Pfam Replication factor-A C terminal domain 290 421 IPR013955 -
Gabi99g00001 571 Gene3D - 254 429 IPR012340 -
Gabi99g00001 571 Pfam Domain of unknown function DUF223 43 107 IPR003871 -
Gabi99g00001 571 Gene3D - 5 111 IPR012340 -
Gabi99g00001 571 CDD RPA1_DBD_A_like 19 105 - -
Gabi99g00001 571 CDD RPA1_DBD_C 288 421 IPR047192 -
Gabi99g00001 571 SUPERFAMILY Nucleic acid-binding proteins 118 242 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi99g00001 Gabi-Chr99 7271 11055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi99g00001 4 405 Core DNA Replication Machinery Family AT4G19130 22.951 6.35e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi99g00001 - - adu:107490971 310.842