Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi999g00006 ATGGTTGGGGAAATGACCAATGTTTTTGCTAGCCCAGATACAAGAAAGAATATGGAGCAGGCTGAAACTAGGTCATCAAGGATGGTGCACCGATATCTTGGTTGTTCTGAGAATCCTCAAGATTGCGCTCCGGTTAGGAGCGCTTCGAGTAGTCTGTTTGCCAGTCCTTCAACCAGTCCACAGAAAAAGAGAAATGGTGATTCTGTGTCATATTATCATGTGACTCCGGGAGGAAATGAATACTGGTCTGCACCACTGATGTCAACCTCTGAAGCCAGGTTGCCACCTCCTGCATTCTTTGGTTTATCAGCATTAGGCACTAATGCTTCTCCATCTCCCCATCAAAGTCCACAGGTAAGAGGTCCCCAGGGACACCTTAGGAGCTCAAGTGGACCTCCATCAACCATACATACCATGTTATCCCTTGAGATCTCAACACCACGTCGCAAAAGTAATGCTCCTGTTAGTGTTCACCCCTTACCCTTGCCTCCTGGGGCAGCCTTGCCTTCACCATTTGCTGCGGCTACTATTTCCGATGCTGTGGCCAAGGCAGAATCATTGCCAATGAAAGGCCCATGGCAAAAAGGGGAACTTATTGGGCGCGGCACATTTGGAAGTGTTTATGTTGCCACCAATAGAGAAACTGGAGCATTATGTGCAATGAAGGAAGTGAAATTATATACTAATGATCCAAATATGAAGCAGATAGTGCAGGAAATTCATGTTCTTAGCCGTCTGAAACATACAAACATCGTGCAGTATTATGGCAGTGAAAGTGTTGAAGACCGGTTTTATATTTATCTGGAATACGTTCATCCCGGTTCAATTAATAAATATGTCCATAAGCGTTGTGGAACCCTAACAGAATCTGTCATTCGGAATTTCACTCGCCATATTCTTTCGGGGTTGGCTTACTTACATAGCAAAAAAATAATTCATAGGGACATCAAAGGGGCCAATCTGCTTGTCGACTCTGCTGGTGTTGTTAAGCTTGCTAATTTTGGGATGGCTATGAATCTAACTGGATATAAAGCTAATCTTTCTTTGTGGGGAAGTCCATACTGGATGGCTCCAGAGCTTTTGCAGGCTGTGATGCAAAAGGATTCCAGCTCTGATCTAGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACAATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGCGAGTATGAAGGAGTTGCAGCTGTGTTTAAGGTTATGAGAGATAGCCCTCCTGTACCTGAAACATTGTCATCTGAGGGTAAAGATTTCCTGAGGAGCTGCTTTAAAAGAAATCCGGCAGAGCGGCCATCTGCTGCAGTGTTACTAGAACATCGATTTTTGAAAAACTCACAACAGCCAGATGTTTTATCTCCCACCCAGAAGTACAATAGAACAAGTTTCATGGATAAACCCCATAGTCCCAGAGGGCAATCTGAAAATAAACCTGATCAGATGTTTATCCCCAATGCAAAGATAGCAAATGGGAAAGCCGCTGTGAGATGA 1512 0.4405 MVGEMTNVFASPDTRKNMEQAETRSSRMVHRYLGCSENPQDCAPVRSASSSLFASPSTSPQKKRNGDSVSYYHVTPGGNEYWSAPLMSTSEARLPPPAFFGLSALGTNASPSPHQSPQVRGPQGHLRSSSGPPSTIHTMLSLEISTPRRKSNAPVSVHPLPLPPGAALPSPFAAATISDAVAKAESLPMKGPWQKGELIGRGTFGSVYVATNRETGALCAMKEVKLYTNDPNMKQIVQEIHVLSRLKHTNIVQYYGSESVEDRFYIYLEYVHPGSINKYVHKRCGTLTESVIRNFTRHILSGLAYLHSKKIIHRDIKGANLLVDSAGVVKLANFGMAMNLTGYKANLSLWGSPYWMAPELLQAVMQKDSSSDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGVAAVFKVMRDSPPVPETLSSEGKDFLRSCFKRNPAERPSAAVLLEHRFLKNSQQPDVLSPTQKYNRTSFMDKPHSPRGQSENKPDQMFIPNAKIANGKAAVR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi999g00006 503 SMART serkin_6 193 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi999g00006 503 Gene3D Transferase(Phosphotransferase) domain 1 192 487 - -
Gabi999g00006 503 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 51 463 - -
Gabi999g00006 503 ProSitePatterns Protein kinases ATP-binding region signature. 199 222 IPR017441 GO:0005524
Gabi999g00006 503 MobiDBLite consensus disorder prediction 1 71 - -
Gabi999g00006 503 Pfam Protein kinase domain 194 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi999g00006 503 MobiDBLite consensus disorder prediction 456 503 - -
Gabi999g00006 503 SUPERFAMILY Protein kinase-like (PK-like) 189 481 IPR011009 -
Gabi999g00006 503 MobiDBLite consensus disorder prediction 42 68 - -
Gabi999g00006 503 MobiDBLite consensus disorder prediction 105 137 - -
Gabi999g00006 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Gabi999g00006 503 MobiDBLite consensus disorder prediction 103 137 - -
Gabi999g00006 503 MobiDBLite consensus disorder prediction 456 487 - -
Gabi999g00006 503 ProSiteProfiles Protein kinase domain profile. 193 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi999g00006 Gabi-Chr999 130672 135247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi999g00006 44 456 MAP Kinase Kinase Kinase AT5G66850 62.243 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi999g00006 Pkinase 1.7e-69 CL0016