Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi999g00002 ATGGCCAAAAGTCTTGGGCTAATCATAGTCTTCATATCCCTGTTTTCTCTGTTTTCTCAAGCCCTTTCAAGAATTTCCTCTAATAATGCCATTGAATTTTGGTGCAGTAAAACCCCACATCCACAAACATGCAAGCATTTTGCAAGAAACCATTACCTCCTTCAAGATGGTTTCCCAAAAAGTGCATCTGAATTCAAGAAATTCATCCTAAGAATTGCTATGGATGAATCTGTGAAAGCCCAAAATCACAACAAGTGGTTAGGCTCCAAATGTGGAAGCAAGCAAGAAAAGGCAGCATGGAGTGATTGCTTGAATCTCTATGAAGACACCATCAGCATTCTTAACGAAACCCTAAACCCTACAAGGAATAGCCCTAGCTATGATCTCCAAACATGGCTTAGCACTGCTCTAACAAACCTTGACACATGCCAAACTGGGTTTGTAGAACTTGGTGTTGACAACAATGTTCTAACCCTCATTCCAAACAAGAATATATCAGAGATCATAAGCAACACTTTGGCTCTTAACAATGCTTCATCAACTACACAAGAGAATAAAAACAGTTACAAAAATGGCTTCCCAAACTGGCTGTCACATGGTGACAGGACGCTTCTACAGTCTTCATCACCATCTCCTGATATTGTGGTAGCAAAAGATGGTTCAGGGAATTTTAAGACCATCAAAGAAGCTTTGGAAGCAGTTCCCAAGAGGAGTGGGAGAAAGAGGTTTGTTATATATGTTAAGCCCGGGGTTTACAATGAGAACCTTGACATTGGGAAGAGTTTGAAGAATATCATGTTGTTTAGTGATAGTATGAGGCTCACTGTCATAACAGGTAGCCGAAGTGTTGGAGGAGGTTCTACCACTTTTAATTCTGCAACAGTTGCTGTGAAAGGAGATGGATTCATTGCTCGTGCCATCACATTCCGCAACACTGCAGGTCCACAAAACCATCAAGCAGTGGCATTGCGTTCTAGTGCTGACCTCTCTGTCTTCTATCGCTGTGGATTTGAAGGGTACCAAGACACTCTCTATGTTCATTCCCAAAGACAATTCTACAAAGAATGTTACATTTATGGCACAGTTGATTTCATCTTTGGCAATGCAGCTGTGGTCTTCCAAAACTGCAACATATATGCAAGGAAACCAACGGGCAAACAGAAAAACGCTATAACAGCACAAGGCAGAACAGACCCTAATCAAAACACTGGTTTTTCCATCCAAAACTCAAGTGTTAAGGCTTCTCAAGAGCTTGTCCCTATGCTTAACTCCTTCAAAACATTCCTGGGTCGGCCATGGAAACAGTATTCAAGAACTGTGTTTATACATACTTACCTTGATACTTTGGTTGACCCTGCAGGGTGGTTGGAATGGAATGGAAATTTTGCACTCAACACTTTGTATTATGGAGAGTATAAGAATTTTGGTCCAAGAGCTTCTACTAGTCAACGAGTGAAATGGGGTGGTTACCATGTCATAACAAGTGCAACTGAAGCATCCAAATTCACAGTTGAGAATTTTATTGAAGGGCAAGCATGGTTACCAGCTACTGGCATTCCATTCTTCCCAGAACTCTGA 1578 0.4125 MAKSLGLIIVFISLFSLFSQALSRISSNNAIEFWCSKTPHPQTCKHFARNHYLLQDGFPKSASEFKKFILRIAMDESVKAQNHNKWLGSKCGSKQEKAAWSDCLNLYEDTISILNETLNPTRNSPSYDLQTWLSTALTNLDTCQTGFVELGVDNNVLTLIPNKNISEIISNTLALNNASSTTQENKNSYKNGFPNWLSHGDRTLLQSSSPSPDIVVAKDGSGNFKTIKEALEAVPKRSGRKRFVIYVKPGVYNENLDIGKSLKNIMLFSDSMRLTVITGSRSVGGGSTTFNSATVAVKGDGFIARAITFRNTAGPQNHQAVALRSSADLSVFYRCGFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVFQNCNIYARKPTGKQKNAITAQGRTDPNQNTGFSIQNSSVKASQELVPMLNSFKTFLGRPWKQYSRTVFIHTYLDTLVDPAGWLEWNGNFALNTLYYGEYKNFGPRASTSQRVKWGGYHVITSATEASKFTVENFIEGQAWLPATGIPFFPEL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi999g00002 525 SUPERFAMILY Pectin lyase-like 208 522 IPR011050 -
Gabi999g00002 525 CDD PMEI-like_3 34 178 - -
Gabi999g00002 525 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Gabi999g00002 525 Gene3D - 207 525 IPR012334 -
Gabi999g00002 525 Pfam Pectinesterase 213 510 IPR000070 GO:0030599|GO:0042545
Gabi999g00002 525 Pfam Plant invertase/pectin methylesterase inhibitor 30 175 IPR006501 GO:0004857
Gabi999g00002 525 FunFam Pectinesterase 207 525 - -
Gabi999g00002 525 ProSitePatterns Pectinesterase signature 2. 358 367 IPR033131 -
Gabi999g00002 525 PANTHER PECTINESTERASE 14 515 - -
Gabi999g00002 525 NCBIfam pectinesterase inhibitor domain 1 177 IPR006501 GO:0004857
Gabi999g00002 525 SMART PMEI_2 26 175 IPR006501 GO:0004857
Gabi999g00002 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 178 IPR035513 -
Gabi999g00002 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 177 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi999g00002 Gabi-Chr999 60606 63268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi999g00002 8 521 Carbohydrate Esterase AT2G45220 58.221 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi999g00002 K01051 - gmx:100776412 820.461