Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi993g00004 ATGGAGATCTTAGATTCAAGGTTGGAACTGCACGAAATTAACACCAGCGAATCTGAAGGATCCGACCCGGGTTCGGACTGGGTCGATTCGGAAGAAGACTCCGATTACGACATGCTTGATGAAACCCATAGCAAGTTCTCAAACCTCACACTCAGGAAAAAGGCAAAAGCGTGCAATGTTGAAGGTAAGGGTCTGGAAACGACTGCAGATTCTTTCGAGGAGAAGTTTGAAAAAGTTCAGAAAACAATCGATGAGGGAACACTAGAGAAATTGAGAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATTGTCTGAGGCTAACTGGAAACAAGGACACACTCATCCAGCGCATAAAGGAGCATCTAGAGATTATAAATGGTGGAGGGGAGAAAAAGTACCCGCCTTCTAGCTTTGTATTGAATTGCAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTTTATGAAATGTTCAACATAGTATCCAGGAGTGCCAGTGGTCCACCTTGTGGCAAAAGAATTGTTGCAGGCCGTATAGTGAAAGAAAGTTATGGTTCTGCCAAACAGCAACATACATTTACGATTGAAGTTCTCTGGAGCAAGGGAGAACAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGAAGGATGAAGAGAAAAGGCTGAAAATCTTGATGGAAAAACACTCTAGGGGATCTCTTGCTAGGGCAGATAGAGAAGGAAGGATACAAGAAAAGGAGAAGAGAAAAACAATTATGAAAAATAGGGTCTCCAAAAAGGATTCAGTAAGAAACCAATGTCAATCACATTCACACATTACATTGTCACAATATCAACCTCAAGAAACAAACGTATCCATTAATCCAGAAAAGTCAGAATTTCCATCTCGAAATTCAGGTTCATCTGCCAATACAAGAAAAGAAACATCTGCTATTGTAAATAAACCAGAAGCTGTAACTGAACAGTGTGGTAAGTCTGTTATGGGGTTTGACAAACTGGGAAGATCCATTGATTCAGGAAGAACATCATTTGTTGTTCACTATTTACATAATCAGCAAGCTTTGAATCACTCAGCTTTCAATATTGATCATATGCGGGAAGCTGAACTTAGTGCAAATCACAATTGCATTGACTTACTTTCCAGAGGAAAACGAACTATTATTGAGAAACACCACACTTTCAGTGCTGAGACAAACGGATTTACAGAGAGGAATCATCATAGGAAGCCTTTGGCAAGTGCAAATCAGTTTCATCCATTGATGCTCAACAGAGAAAGTTATAAGCCAAAACAACTGTGTAGACATTATTCCCGTGGGAGGTGCTATTTTGGGGACAACTGCAAATTTTTACATGATTTGAGCAACAAAGGGAATGCATGA 1434 0.4038 MEILDSRLELHEINTSESEGSDPGSDWVDSEEDSDYDMLDETHSKFSNLTLRKKAKACNVEGKGLETTADSFEEKFEKVQKTIDEGTLEKLRVDECKLYLRKNCLRLTGNKDTLIQRIKEHLEIINGGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIVSRSASGPPCGKRIVAGRIVKESYGSAKQQHTFTIEVLWSKGEQPLPPLYPLLIKGRNLYRLKTLRQKWKDEEKRLKILMEKHSRGSLARADREGRIQEKEKRKTIMKNRVSKKDSVRNQCQSHSHITLSQYQPQETNVSINPEKSEFPSRNSGSSANTRKETSAIVNKPEAVTEQCGKSVMGFDKLGRSIDSGRTSFVVHYLHNQQALNHSAFNIDHMREAELSANHNCIDLLSRGKRTIIEKHHTFSAETNGFTERNHHRKPLASANQFHPLMLNRESYKPKQLCRHYSRGRCYFGDNCKFLHDLSNKGNA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi993g00004 477 PANTHER SAP DOMAIN-CONTAINING PROTEIN 14 471 - -
Gabi993g00004 477 SMART c3hfinal6 446 471 IPR000571 GO:0046872
Gabi993g00004 477 Gene3D SAP domain 71 135 IPR036361 -
Gabi993g00004 477 Coils Coil 226 246 - -
Gabi993g00004 477 MobiDBLite consensus disorder prediction 1 34 - -
Gabi993g00004 477 Gene3D - 439 476 - -
Gabi993g00004 477 Pfam CCCH-type zinc finger 450 470 IPR041367 -
Gabi993g00004 477 ProSiteProfiles SAP motif profile. 88 122 IPR003034 -
Gabi993g00004 477 MobiDBLite consensus disorder prediction 272 335 - -
Gabi993g00004 477 MobiDBLite consensus disorder prediction 285 329 - -
Gabi993g00004 477 Pfam SAP domain 88 122 IPR003034 -
Gabi993g00004 477 ProSiteProfiles Zinc finger C3H1-type profile. 445 472 IPR000571 GO:0046872
Gabi993g00004 477 MobiDBLite consensus disorder prediction 1 16 - -
Gabi993g00004 477 SUPERFAMILY SAP domain 77 123 IPR036361 -
Gabi993g00004 477 SUPERFAMILY CCCH zinc finger 446 470 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi993g00004 Gabi-Chr993 43298 47073 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi993g00004 SAP 1.3e-06 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi993g00004 - - gmx:100815642 618.616