Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi992g00008 ATGTCGACTTTCCCTGATGCCGACGAGTTCTTGAAGGAGAAGCCTAGCCTTGGAATGAGGGCCGAAGCAACTACCCTGGATTTGTTAACCAAGGTGCGAAATTCGGATGATGCTTCGCCGCAATGTGTTTCCGTTACGGATTTCCTTCCCCGGTTTGTGGAAAACGTTTGCATTAAGCAGTCTAACGTCAGGTCACCTGTCCCTGAAACTCCCCAGTTGACAATATTCTATGCCGGGAAAGTGCTAGTGTTTGATGCTTTTCCGCCTGAGAAGGCAACGGAAATCATGGAGTTAGCCACCAAGCTTGCCTGTGATGATTCTGTCAACAACAAACATACTTTTAGAGTTCCCGTTAATCATGAAAATTTGAACGTGATCAAGGCACCTCAATTAATAAGCAATCCTTGTCCAGGACCCCAAGTTTTTGATTCAGATATGAGATATCCAAGAAGAGTTTCATTATTAAAGTTTCTTGAGAAGAGGAAAGAAAGGGTGATTGCTAGAGGACCTTATCAAATTAACAGTTGTCCCAATCACGAGGGAAGCCGTTCCAAACACTTTGACCTTAACTTATAG 576 0.4375 MSTFPDADEFLKEKPSLGMRAEATTLDLLTKVRNSDDASPQCVSVTDFLPRFVENVCIKQSNVRSPVPETPQLTIFYAGKVLVFDAFPPEKATEIMELATKLACDDSVNNKHTFRVPVNHENLNVIKAPQLISNPCPGPQVFDSDMRYPRRVSLLKFLEKRKERVIARGPYQINSCPNHEGSRSKHFDLNL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi992g00008 191 SMART tify_2 66 101 IPR010399 -
Gabi992g00008 191 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 44 176 IPR040390 -
Gabi992g00008 191 Pfam Jas motif 150 172 IPR018467 -
Gabi992g00008 191 ProSiteProfiles Tify domain profile. 66 101 IPR010399 -
Gabi992g00008 191 Pfam tify domain 68 99 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi992g00008 Gabi-Chr992 97022 98466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi992g00008 20 173 Tify Gene Family AT1G19180 33.333 1.26e-15 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gabi992g00008 tify 7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi992g00008 K13464 - gmx:100778559 178.718