Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi990g00015 ATGTTTCATTTCCACAAAGGTGACACCGTCGAGGTCACCAAGCCCAAAACCACCACCACCACCAACTTCTACTACCCTGCCACGGTGGTTCGACCTCCTTCGAAGCGCAAAAACCTCGTTTTCCTCGAGTACCTAACCCTCTTCGCTCCCTCCGAGGAATCCCAACCACCCAAACACCTCAGAGAGAACGTTAACGTCGCAAGCGTGAGGCCCAAGCTTCCCCACCAGTTAAATTCATGGTTCAAAGTCGGTGACGCCGTCGACGCTTACCGTCAAACCCACAATGCGTGGTGCCCCGGAACCGTCTCCGACATCCTCGAAAACTCTAACTACCTCGTCGCATTTCACGATGATGATTCCGCCGCCGTCGACCACTGTAACCTCCGCCTTCACCGGAATTGGGTCCACGGGAATTGGGTCCCACCTCTCCCCGACAAGGAGCAGCACCCTGTGATGGTGACAGAGCCTGAAAATTTAAGGTTTAAGATTAAATATAGTAGGAAACCGCTAAAGGAATCAAAGTTTAAGAAAGGGGAAACAGTGGAAGTTAGAAGCGATGATGAAGGTTATAAAGGTGCTTGGTTTATTGCTACTGTTGTTGATATAATAGGTAAAGACAGGTTTCTTGTAGAATATAGGGACCTTACTACAGATGATGGTACCCAGGATTTGAAAGAAGAAACACACGCAAGGTTTATTAGGCCTTGCCCCTCTCAACTTGCATTTGTTGCTTCTTTCAAACAGTTCCAAGAAGTTGATGCATGGTACAATGATGGGTGGTGGGAAGGTGTGGTTCTTCAAGTACTGAATAGCAGGGAATGTTTTGTTTCTTTCATTGACAATGATGTGTTGAGATGTGAAAATTCTAAACTAAGGCCTCATCAGGATTGGGTTAACGGAAGATGGGACATGCCTTCCAAGAAATCAAGTGAGCTGACAAAGAAGTTTGGAGATGTGATGTCTAAAGCCAAGAATATTACTGGAAATAAATTAATATTTAAATGTCAAAAGCCTTGTGAGCTTGCGAAGAAGCCTACAGATGTAATGTCAAGGACCACGAACACCGGAAGCAAATTTGTGTTACATTTCTGTAAAGGTGCAAAGGTAGAAGTTAGAAGTGATGAAGAAGGCTACCAAGGTGCCTGGTATACTGCCCTTATTGTTAACTCTTTGCAGAATGGCAAGTACTTGGTGGAGTATTTGACCTTGAAAACTGATGACTTAACTGAACAACTAAAAGAAGCGGCAGATGCTTCAGATATCAGGCCATATCCACCAGATATCAATCATCGTCACCACTTTACGCCGCGGGAATGGGTTGATGCTTGGTATAATGATGGATGGTGGGTAGGTCAAGTATCTACTGTTCTTCGTGGCTTCAAGTACAGGGTTTACTTTTCGACTACAAAAGAGGAGCTAGAATTTGATCATTGTCACCTGAGGCCCCATCAGGAATGGATCGATGGAAGATGGGTACTTGCTTCTTCGGGTTGA 1494 0.4518 MFHFHKGDTVEVTKPKTTTTTNFYYPATVVRPPSKRKNLVFLEYLTLFAPSEESQPPKHLRENVNVASVRPKLPHQLNSWFKVGDAVDAYRQTHNAWCPGTVSDILENSNYLVAFHDDDSAAVDHCNLRLHRNWVHGNWVPPLPDKEQHPVMVTEPENLRFKIKYSRKPLKESKFKKGETVEVRSDDEGYKGAWFIATVVDIIGKDRFLVEYRDLTTDDGTQDLKEETHARFIRPCPSQLAFVASFKQFQEVDAWYNDGWWEGVVLQVLNSRECFVSFIDNDVLRCENSKLRPHQDWVNGRWDMPSKKSSELTKKFGDVMSKAKNITGNKLIFKCQKPCELAKKPTDVMSRTTNTGSKFVLHFCKGAKVEVRSDEEGYQGAWYTALIVNSLQNGKYLVEYLTLKTDDLTEQLKEAADASDIRPYPPDINHRHHFTPREWVDAWYNDGWWVGQVSTVLRGFKYRVYFSTTKEELEFDHCHLRPHQEWIDGRWVLASSG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi990g00015 497 CDD Tudor_Agenet_AtDUF_rpt1_3 363 426 - -
Gabi990g00015 497 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 3 164 - -
Gabi990g00015 497 SMART agenet_At_2 79 136 IPR014002 -
Gabi990g00015 497 SMART agenet_At_2 244 299 IPR014002 -
Gabi990g00015 497 SMART agenet_At_2 361 429 IPR014002 -
Gabi990g00015 497 SMART agenet_At_2 173 241 IPR014002 -
Gabi990g00015 497 SMART agenet_At_2 432 488 IPR014002 -
Gabi990g00015 497 Gene3D - 353 434 - -
Gabi990g00015 497 CDD Tudor_Agenet_AtDUF_rpt2_4 83 130 - -
Gabi990g00015 497 CDD Tudor_Agenet_AtDUF_rpt2_4 250 293 - -
Gabi990g00015 497 Pfam Agenet domain 7 74 IPR008395 -
Gabi990g00015 497 Pfam Agenet domain 178 237 IPR008395 -
Gabi990g00015 497 Pfam Agenet domain 366 426 IPR008395 -
Gabi990g00015 497 Pfam Agenet domain 84 144 IPR008395 -
Gabi990g00015 497 CDD Tudor_Agenet_AtDUF_rpt1_3 175 237 - -
Gabi990g00015 497 CDD Tudor_Agenet_AtDUF_rpt2_4 440 482 - -
Gabi990g00015 497 Gene3D - 77 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi990g00015 Gabi-Chr990 89361 97448 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi990g00015 372 486 PHD Transcription Factor Family AT5G58610 28.889 3.43e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi990g00015 - - adu:107483399 627.091