Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi989g00004 ATGGGTTTAGGGTGGAGAAGAAGGAAGAAGAGCCACCACAAAGCCAAGGTGGAGGAGCTGGTGACTCCTAACCAATTCCGGTGCCCAATTTCTCTCGAGTTGATGAAGGATCCTGTCACATTGTCAACTGGGATTACATATGACAGAGAAAGCATAGATAGGTGGCTTGATGATGGGAATTACAAATGCCCTGTTACCAACCAGATTGTCAACAACTTTGATCTCATTCCCAACCACACTCTCAGGATAATGATCCAAGATTGGTGTGTGGAAAATCAACAACATGGCGTTGAAAGAATCCCAACCCCAAGAATACCCATTAGCCCAATTGAGGTAGCTGATGTTCTTCTGCACGTGAAGGCCTCATCCTCAGCTACACGTCTGGATCAATACAAGTGCCTGGAATTGGTTCAGAAAATCGAGAGGTGGAGCGCTGAGAGCGAGAGAAACAGGCGATGTATAATGGAGAATGGAGCATCTTCTGCATTAGCCTCTGCCTTTGATGCATTTGCAAATGATTCCATTGAGAGGAATGTGAGTATTCTGGATCAGATTTTGTCTGCTCTCGATTCCATGTTTCCACTTCAATTGGAAGCGCGGAAATATATGGGGTCTTTGGCTTCTTTACGTTGCATGGTTTGGTTCTTGAAACACCAAGATCTCTCAGGGAAAGAGAAATCCATTGTTGCCTTGAAAGAGCTTCTTTCTTTTGGTGATCGCCAGCATGTGGAGGCGCTGGCAGAAATTGAAGGAGTCAATGAACTATTGATGGAATTACTTAACAAAAGAATTTTTAGTCCAACCATTACAAAAGCTTCGTTGGTGATTGTTTGGTACTTGGTTTCATCTTCTTCTCCTCGTGGTGAGAAGATGAAATTGCAATTTATTGAATTGGGTCTGGTTTCTGCGGTGCTGGACATTCTCATTGACTCAGAAAGAAGCTCATGTGAGAAGGCTCTGGGTATTTTTGACTCCCTCTGCAGTTGTGAAGAAGGAAGAAAAAAAGCTTATGGTAATGCTCTTACAATTCCTCTCTTGGTCAAGAAGTTATTGCGAGTTTCAGCAACGGGTTCAAATTACTCTGTTTCTGCTATTTGGAAGCTGTGCAAATTTAGAGAGAGGGACGAAGAAATGGTTTTGGTTGAGGCCCTTCAAGTTGGTGCCTTTCATAAGCTCTTGCTAATATTGCAGGTCGGCTGTGGTGATAAGACCAAGGAGAAAGCCACTGAGCTTCTCAAACTGCTCAATCCTTACAGGGCTGGTGTGGAATGCATAGACTCCGATTTCAAGAACCTCAAGAGATCAATTTAA 1311 0.4348 MGLGWRRRKKSHHKAKVEELVTPNQFRCPISLELMKDPVTLSTGITYDRESIDRWLDDGNYKCPVTNQIVNNFDLIPNHTLRIMIQDWCVENQQHGVERIPTPRIPISPIEVADVLLHVKASSSATRLDQYKCLELVQKIERWSAESERNRRCIMENGASSALASAFDAFANDSIERNVSILDQILSALDSMFPLQLEARKYMGSLASLRCMVWFLKHQDLSGKEKSIVALKELLSFGDRQHVEALAEIEGVNELLMELLNKRIFSPTITKASLVIVWYLVSSSSPRGEKMKLQFIELGLVSAVLDILIDSERSSCEKALGIFDSLCSCEEGRKKAYGNALTIPLLVKKLLRVSATGSNYSVSAIWKLCKFRERDEEMVLVEALQVGAFHKLLLILQVGCGDKTKEKATELLKLLNPYRAGVECIDSDFKNLKRSI 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi989g00004 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 100 IPR013083 -
Gabi989g00004 436 FunFam RING-type E3 ubiquitin transferase 22 93 - -
Gabi989g00004 436 PANTHER WDSAM1 PROTEIN 18 416 IPR045185 GO:0061630
Gabi989g00004 436 Pfam U-box domain 23 93 IPR003613 GO:0004842|GO:0016567
Gabi989g00004 436 SUPERFAMILY ARM repeat 142 402 IPR016024 -
Gabi989g00004 436 SUPERFAMILY RING/U-box 14 98 - -
Gabi989g00004 436 CDD RING-Ubox_PUB 23 75 IPR045210 -
Gabi989g00004 436 SMART Ubox_2 25 88 IPR003613 GO:0004842|GO:0016567
Gabi989g00004 436 Gene3D - 121 415 IPR011989 -
Gabi989g00004 436 ProSiteProfiles U-box domain profile. 21 95 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi989g00004 Gabi-Chr989 42172 43482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi989g00004 1 434 U-box Gene Family AT5G37490 41.480 3.02e-110 330