Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi989g00003 ATGCATGGCGATGACGGAAGAGGGAGGAGGAGGAGAGGGGAGAGCGATAATTCTGAGGCGACGTGGAAAAGCTTGGGGCGTCGGATGGTGGCATGTTACGGCGACCCCGAAGCTAGTTCCACCACATGCGGAGGAAGGCCTCCTGATCTATGGCGGCAATTTGTGATTCATCCTGATAACCGGTTGTACCTCTTGTGGAAGCATTTCATTCTGATATGGGCAGTCTATTCATCGTTCTTCACCCCAATGGAGTTCGGTTTCTTCAGAGGCTTACCAGAGCATATCTTCCTCCTTGACATCGCCGGCCAGTTCGTTTTCCTCATCGACATTGTTCTCCGCTTTTTCGTTGGCTATCGCGACACCCACTCCTATTGCATCGTCTACAATCGCTATCAAATTGCTATCAGTTACCTCAAGTCTCGCTTCATCCTTGATCTTCTCAGTTGTCTCCCCTGGGATTATATTTACAAGGCTACTGGGAAGAAAGAGGTTGTGAGATATCTGCTATGGATAAGGCTATGCCGAGCTTGTAGAGTAACGGAATTTTTCGAGAGGGTGGAGAAAGATATTAGAGTGCATTACCTGTGTACCAGAATTGTTAAACTTCTCGTTGTTGAACTTTACTGTACTCATACTGCTGCCTGCATCTTCTACTATCTTGCTACCACCATGCCCCCCTCCAAGGAAGCTTACACCTGGATTGGCAGCTTGAAGATGGGTGAATACACCTTTTCTGACTTCAGAAACATCAATCTTTGGAAGCGTTACGTCACATCACTCTACTTTGCAATTGTTACCATGGCAACTGTTGGCTACGGAGACATTCATGCAGTCAATGTCAGAGAAATGATATTTATCATGATCTACGTCTCCTTTGACATGATTCTGGGCGCTTACCTTCTTGGCAATATGACTGCATTGATTGTCAAAGGATCAAAAACAGAGAGGTTCAGGGATAAAATGGCTGAAATCATTAAGTACGTCAATAAAAACAATTTGGACAAGCAAATAGGTAATGCCATCAAAGGTCATTTGCGCTTACAGTATGATCGCAGCAGCTACACCGAAGCTTCTGTTCTTCAGGATATCCCAATCACTGTCCGCACGAAGATTTCAATAATTTTGTATGATCAGTTCATTCAGAAAGTTTCTCTTTTCAAGGGATGCTCTTCGGAGTTTATTAAGCTGATTGCAACCAAAGTCCACGAAGAGTTTTTCCTCCCAGGGGAATTGGTAATGGAGCCAGGAGATGTAGCAGATCAACTTTACTTCGTATATCATGGTGACCTGCATGAGATAAGGAGGGGAGATTGTGATACAGAAGAGACAATCACATTGCATACCTATAGTTACTTCGGCGAGGTTTCTTTTCTTTGCAATATGCCTCAAACTTCCATGGTTCAAGCTCATGAATTTTGCAAGGTTTTGCGACTTGATAAGCAATCCTTTACAGAAATACTGAAGATATACTTTGTAGATGGCCGTATTATCTTGAACAATCTCCTTGAGGGAAAAGACTCCAGTCTTAAGCGTAAGCTTTTGGAATCAGACTTCACCCAGACTATTGCAAACCAGGAAACAGAGCTGGTTATGAGGATGAACTGTGCTGCCTATGATGGTCACCTTGACCTTTTGAAACGTTTGATCGGATCAGGGGCCGATCCCAATAAGACTGATTATGATGGCAGATCACCCTTGCATATCTCAGCATCAAAAGGATATGTAGATATTTCGCACTTTCTTGTTGAACAAGGAGTAAATATCAATTTGGCAGATAAATTTGGGAGTACTCCCTTGCTTGATGCCATCAAGAATGGACATGAAGAAGTAGCATCTTTACTTGTTAATGCGGGAGCTACCCTGACTATTGATGATGCTGGAAATTTTCTCTGCATGATTGTTGCAAAGCGGGAGTTGGACATTTTAAAAATGGTTCTGGTCTGTGGAATTAATCCAAATGCCAAAAATTATGATCAGCGTACACCTCTTCACATAGCCGCCTCCGAAGGTTTGTATACAATGGCTGAATTACTTCTAGAAGCAGGAGCAAGTGTTTTATCTAAGGACAGATGGGGAAATACACCGCTTGATGAAGCTCGTACATGCGGAACTAGAAATATGATCAAAATGCTTGAAGTTGCAAAAGTTTCCCAATTGGCTGAGTTATCCGTTAGTATTCCTGAAACTCGAGAGGAAATTCCCAAAAAGAGATGTACAGTATTTCCTTTCCACCCATTGGATCACAAAGAGGATAGAAGAGAGGGAGTTGTCCTATGGGTTCCACAAAGCATTGAAGAGCTTGTAAAGGTGGCAATGAAACATTTGGAAATTTCAAATGCTTCCTGTATTTTATCAGAACAAGGTGGGAAAATTCTTTATGTAGACATGATTAGCAATGATGAGAAGCTATTTCTGGTGAGTGAAGCACAGAACAAAGTGCACAAAGTAACCAAGTGTTCTGGGCATCCAAGTGAGTCAAGTGACCAGGCACAACAATAG 2499 0.427 MHGDDGRGRRRRGESDNSEATWKSLGRRMVACYGDPEASSTTCGGRPPDLWRQFVIHPDNRLYLLWKHFILIWAVYSSFFTPMEFGFFRGLPEHIFLLDIAGQFVFLIDIVLRFFVGYRDTHSYCIVYNRYQIAISYLKSRFILDLLSCLPWDYIYKATGKKEVVRYLLWIRLCRACRVTEFFERVEKDIRVHYLCTRIVKLLVVELYCTHTAACIFYYLATTMPPSKEAYTWIGSLKMGEYTFSDFRNINLWKRYVTSLYFAIVTMATVGYGDIHAVNVREMIFIMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMAEIIKYVNKNNLDKQIGNAIKGHLRLQYDRSSYTEASVLQDIPITVRTKISIILYDQFIQKVSLFKGCSSEFIKLIATKVHEEFFLPGELVMEPGDVADQLYFVYHGDLHEIRRGDCDTEETITLHTYSYFGEVSFLCNMPQTSMVQAHEFCKVLRLDKQSFTEILKIYFVDGRIILNNLLEGKDSSLKRKLLESDFTQTIANQETELVMRMNCAAYDGHLDLLKRLIGSGADPNKTDYDGRSPLHISASKGYVDISHFLVEQGVNINLADKFGSTPLLDAIKNGHEEVASLLVNAGATLTIDDAGNFLCMIVAKRELDILKMVLVCGINPNAKNYDQRTPLHIAASEGLYTMAELLLEAGASVLSKDRWGNTPLDEARTCGTRNMIKMLEVAKVSQLAELSVSIPETREEIPKKRCTVFPFHPLDHKEDRREGVVLWVPQSIEELVKVAMKHLEISNASCILSEQGGKILYVDMISNDEKLFLVSEAQNKVHKVTKCSGHPSESSDQAQQ 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi989g00003 832 ProSiteProfiles Ankyrin repeat profile. 594 626 IPR002110 GO:0005515
Gabi989g00003 832 Pfam Cyclic nucleotide-binding domain 405 488 IPR000595 -
Gabi989g00003 832 ProSiteProfiles Ankyrin repeat region circular profile. 561 593 - -
Gabi989g00003 832 MobiDBLite consensus disorder prediction 1 20 - -
Gabi989g00003 832 Pfam Ion transport protein 65 309 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi989g00003 832 SMART cnmp_10 385 502 IPR000595 -
Gabi989g00003 832 ProSiteProfiles KHA domain profile. 737 823 IPR021789 -
Gabi989g00003 832 ProSiteProfiles Ankyrin repeat region circular profile. 658 690 - -
Gabi989g00003 832 FunFam Potassium channel KAT2 374 508 - -
Gabi989g00003 832 SMART ANK_2a 625 654 IPR002110 GO:0005515
Gabi989g00003 832 SMART ANK_2a 594 623 IPR002110 GO:0005515
Gabi989g00003 832 SMART ANK_2a 658 687 IPR002110 GO:0005515
Gabi989g00003 832 SMART ANK_2a 561 590 IPR002110 GO:0005515
Gabi989g00003 832 SMART ANK_2a 691 720 IPR002110 GO:0005515
Gabi989g00003 832 SMART ANK_2a 528 557 IPR002110 GO:0005515
Gabi989g00003 832 CDD CAP_ED 385 498 IPR000595 -
Gabi989g00003 832 MobiDBLite consensus disorder prediction 1 18 - -
Gabi989g00003 832 Gene3D Jelly Rolls 355 525 IPR014710 -
Gabi989g00003 832 Pfam Ankyrin repeats (many copies) 647 699 IPR002110 GO:0005515
Gabi989g00003 832 PRINTS EAG/ELK/ERG potassium channel family signature 99 109 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi989g00003 832 PRINTS EAG/ELK/ERG potassium channel family signature 208 218 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi989g00003 832 PRINTS EAG/ELK/ERG potassium channel family signature 300 309 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi989g00003 832 PRINTS EAG/ELK/ERG potassium channel family signature 256 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi989g00003 832 PANTHER POTASSIUM CHANNEL AKT1 39 809 IPR045319 GO:0005249|GO:0006813
Gabi989g00003 832 Gene3D - 628 717 IPR036770 -
Gabi989g00003 832 ProSiteProfiles Ankyrin repeat profile. 561 593 IPR002110 GO:0005515
Gabi989g00003 832 Gene3D - 65 310 - -
Gabi989g00003 832 SUPERFAMILY cAMP-binding domain-like 312 501 IPR018490 -
Gabi989g00003 832 SUPERFAMILY Ankyrin repeat 532 711 IPR036770 -
Gabi989g00003 832 Gene3D - 526 627 IPR036770 -
Gabi989g00003 832 ProSiteProfiles Ankyrin repeat profile. 658 690 IPR002110 GO:0005515
Gabi989g00003 832 Pfam Ankyrin repeats (3 copies) 535 624 IPR002110 GO:0005515
Gabi989g00003 832 ProSiteProfiles cAMP/cGMP binding motif profile. 385 487 IPR000595 -
Gabi989g00003 832 Pfam KHA, dimerisation domain of potassium ion channel 736 805 IPR021789 -
Gabi989g00003 832 SUPERFAMILY Voltage-gated potassium channels 57 309 - -
Gabi989g00003 832 FunFam Potassium channel SKOR 64 309 - -
Gabi989g00003 832 PRINTS Ankyrin repeat signature 674 688 IPR002110 GO:0005515
Gabi989g00003 832 PRINTS Ankyrin repeat signature 562 577 IPR002110 GO:0005515
Gabi989g00003 832 ProSiteProfiles Ankyrin repeat region circular profile. 594 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi989g00003 Gabi-Chr989 23483 37184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi989g00003 53 690 Ion Channels AT5G37500 59.002 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi989g00003 K21867 - gmx:100798698 1184.86