Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi989g00001 ATGGCAGTTGTACGAGACCGCCGCCACCTCAACCTCCGTCTCCCCCTCCCAGACCTCTCAGAGCGCCGTCCCCGTTTCCCTCTCCCTCTTCCCCCCGCCTCCGCCGCCAAACCCTCCACCGCCGACGCCATAGCCCCCAATGACATCGAAAAGCTCCACGTTCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAGCGCACCTCCGCCATCTACGCCCTCAAGGTGGTCCACGCCGACTCGGACTCACTGACCCGACGCCAGGTCCGACGAGAAATGGATATCCTCCGGCGAACGGATTCCCCTCACGTGGTCCAGTGCCACGGGTTCTTCGAGAAGCCCTCCGGCGACATCGCCATCGTCATGGAGTACATGGATTTGGGAACTCTGGACACGCTGCTCAAGAACAACGGCACCTTCTCGGAACCCCAACTGGCGACGGTGGCGCGTCAGGTGCTCAGCGGGCTCAGCTACCTCCACGCGCACAAGATCATACACCGCGACATCAAGCCGTCGAACCTTCTTGTGAAGGGGAATATGGAGGTGAAGATCGGGGATTTCGGTGTGAGCAAGGTGATGTGCCGCACACTTGACGCTTGCAATTCATACGTGGGAACGTGCGCTTACATGAGCCCCGAGCGTTTCGACCCCGATTCCTATGGCGGGAACTATAACGGGTATGCGGGTGATATTTGGAGCCTGGGTTTGACCCTTTTCGAGCTCTACGTGGGTCACTTCCCCTTTCTTCCGATGGGCCAGAGACCCGATTGGGCCACCCTCATGTGCGCTATTTGTTTCGGGGATCCACCGACGTTGCCGGATGGTGCGTCGTCGGAGTTTCGGAGCTTCATTGAGTGTTGCTTGAAGAAGGAATCCAGCGACCGGTCGACGGCGTCTCAGCTATTGAGCCACCCCTTCCTTCGTTGTTAA 939 0.5964 MAVVRDRRHLNLRLPLPDLSERRPRFPLPLPPASAAKPSTADAIAPNDIEKLHVLGHGNGGTVYKVRHKRTSAIYALKVVHADSDSLTRRQVRREMDILRRTDSPHVVQCHGFFEKPSGDIAIVMEYMDLGTLDTLLKNNGTFSEPQLATVARQVLSGLSYLHAHKIIHRDIKPSNLLVKGNMEVKIGDFGVSKVMCRTLDACNSYVGTCAYMSPERFDPDSYGGNYNGYAGDIWSLGLTLFELYVGHFPFLPMGQRPDWATLMCAICFGDPPTLPDGASSEFRSFIECCLKKESSDRSTASQLLSHPFLRC 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi989g00001 312 FunFam Mitogen-activated protein kinase kinase 1 31 129 - -
Gabi989g00001 312 SMART serkin_6 49 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi989g00001 312 FunFam Mitogen-activated protein kinase 2 130 312 - -
Gabi989g00001 312 SUPERFAMILY Protein kinase-like (PK-like) 45 311 IPR011009 -
Gabi989g00001 312 MobiDBLite consensus disorder prediction 21 40 - -
Gabi989g00001 312 Gene3D Phosphorylase Kinase; domain 1 40 123 - -
Gabi989g00001 312 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 38 312 - -
Gabi989g00001 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Gabi989g00001 312 ProSiteProfiles Protein kinase domain profile. 49 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi989g00001 312 Pfam Protein kinase domain 50 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi989g00001 312 CDD PKc_MAPKK_plant_like 47 311 - -
Gabi989g00001 312 Gene3D Transferase(Phosphotransferase) domain 1 124 312 - -
Gabi989g00001 312 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi989g00001 Gabi-Chr989 6728 7901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi989g00001 1 311 MAP Kinase Kinase Gene Family AT1G73500 64.103 9.46e-141 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi989g00001 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi989g00001 K20604 - qsa:O6P43_008459 503.442