Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi988g00003 ATGTCCATAAACCACTACTCCTTGGACCTTCCTGAAACGACACCGTGGTGGACTCAACAACAACAACAACAACCCATCTTAATGGAACCAATCCACAACCCCTCCATTCACCATTCTTGGCCCCCCCAACACCACCCCAACATCACTCCCCGTTTCAACCTCAACAATCAAAACGACGACAAAGAACAAGAAGAAGACGATGAAAACAACAACAACTACGACCAAGCCGCCACCCCCGCCGACTCCTCCGCCGCAACGGAAGGAGCAGAAGACGAGAAGGAACCCATGTTCGAGAAGCCATTAACGCCGAGTGACGTGGGCAAGCTCAACCGCCTCGTAATCCCAAAGCAGCACGCGGAGAAGTACTTCCCCTTGGGCGCGAGTGGCGGCGGCGGCGACTCGGGCGAGTGCAAGGGGCTGCTACTGAGTTTCGAGGACGAGTCAGGGAAGTGCTGGCGATTCCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTGTTGACCAAGGGTTGGAGCCGTTACGTTAAGGATAAGCGCCTCGACGCCGGCGACGTCGTTTTGTTCGAGCGCCACCGCGTCGATGCTCACCGCCTCTTCATTAACTGGAGGCGCCGAAGGCAAAGCAATACCTCACCGGCGCACGTTAGTAGGTCGGTTGGACACGGCAAGACCGGTGATGGGAATAGCAATAGTAATAAAAGTGGGGCTAATGTTGGTGGTGTGGGCGTGGTGTGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTACGCACCTGTCCTTGCCATACCAACATGACTCTCTTCATGCAGGGAGTGGGTCCGAAGGACAGAACCAAAGGACGAGACCGGTGGGAAACAGTTCGAGTTCTAGTTCGAGTTCAAGTTCAAGGGTACTTAGGTTGTTTGGGGTCAACATGGAATGCCAAACTGAACATGATGATTCTGGACCCTTCACACACGAATGCTCCTACAATAGTAACAATATGCCATCAATCCAGGGTACAGATACCCATCATTTCTACCACCATCATCAACCTCCTTATTCTTCCAATCCTCACCCTCACATGGTACGTCACCAACCATACTACTACTAG 1095 0.5269 MSINHYSLDLPETTPWWTQQQQQQPILMEPIHNPSIHHSWPPQHHPNITPRFNLNNQNDDKEQEEDDENNNNYDQAATPADSSAATEGAEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGASGGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDAHRLFINWRRRRQSNTSPAHVSRSVGHGKTGDGNSNSNKSGANVGGVGVVWTRGFYSAHPYPTHLSLPYQHDSLHAGSGSEGQNQRTRPVGNSSSSSSSSSSRVLRLFGVNMECQTEHDDSGPFTHECSYNSNNMPSIQGTDTHHFYHHHQPPYSSNPHPHMVRHQPYYY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi988g00003 364 FunFam B3 domain-containing protein 90 215 - -
Gabi988g00003 364 MobiDBLite consensus disorder prediction 270 296 - -
Gabi988g00003 364 MobiDBLite consensus disorder prediction 32 104 - -
Gabi988g00003 364 MobiDBLite consensus disorder prediction 209 237 - -
Gabi988g00003 364 Gene3D - 85 217 IPR015300 -
Gabi988g00003 364 SMART B3_2 97 206 IPR003340 GO:0003677
Gabi988g00003 364 CDD B3_DNA 95 196 IPR003340 GO:0003677
Gabi988g00003 364 SUPERFAMILY DNA-binding pseudobarrel domain 92 209 IPR015300 -
Gabi988g00003 364 ProSiteProfiles B3 DNA-binding domain profile. 97 206 IPR003340 GO:0003677
Gabi988g00003 364 Coils Coil 51 71 - -
Gabi988g00003 364 MobiDBLite consensus disorder prediction 266 296 - -
Gabi988g00003 364 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 319 IPR044800 GO:0003700
Gabi988g00003 364 MobiDBLite consensus disorder prediction 40 56 - -
Gabi988g00003 364 Pfam B3 DNA binding domain 97 205 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi988g00003 Gabi-Chr988 105432 107663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi988g00003 90 314 RAV Transcription Factor Family AT5G06250 50.655 1.66e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi988g00003 B3 2.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi988g00003 K09287 - gmx:100795470 404.06