Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi987g00008 ATGCAAGTCCCAACGGCATTTCAACCTATGAAACCCCAGTTTCCTGAACAAGAACAACTTAAATGCCCACGTTGTGAATCAACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCACAGCCACGCCATTTTTGCAAGAATTGCAAAAGGTATTGGACCAAAGGAGGTTCTTTGAGAAACATCCCAGTTGGTGGTGGAAGCAGAAAGAATACAAAACGATCATCCAGCAACTACAAACCCTCTGCATCATCTTCTCCATCACCATCAGTTTCTTCTACATCCTCTGCAGTCCAGGCTCCTGCTCCAGAATCTGACCCGACCCGGATTTACTCCAACCCGGTTGATCAGGACCGAAGGGTGCTAAATTTTGGTGGGAGTTTCAGTTCCCTTCTGGCATCAAATGGGCATTTGGGGAGCCTCTTGGAGGGTCTGAATTCAACTGGGTCAAATCTAAAAATGGTTCAAATGCAAGACTTTGGGGAGAATGCAAGTTCTGGTCCACTGGTGAATCCGGATTCGGGTAGGAATCCCGGGTCGGAGATGCAGAGCAATGGCAATGCAGAGAGATTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTAGCAATGAGTGGTCTAACCTTGCAATATACACTCCTGGGTCAAGTTTTCAGTAG 669 0.4604 MQVPTAFQPMKPQFPEQEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGSRKNTKRSSSNYKPSASSSPSPSVSSTSSAVQAPAPESDPTRIYSNPVDQDRRVLNFGGSFSSLLASNGHLGSLLEGLNSTGSNLKMVQMQDFGENASSGPLVNPDSGRNPGSEMQSNGNAERFLSMQNGDSSCWNGSNEWSNLAIYTPGSSFQ 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi987g00008 222 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Gabi987g00008 222 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Gabi987g00008 222 MobiDBLite consensus disorder prediction 163 187 - -
Gabi987g00008 222 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 184 IPR045174 GO:0003700|GO:0006355
Gabi987g00008 222 MobiDBLite consensus disorder prediction 69 103 - -
Gabi987g00008 222 MobiDBLite consensus disorder prediction 61 115 - -
Gabi987g00008 222 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi987g00008 Gabi-Chr987 82745 84506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi987g00008 1 143 C2C2-Dof Transcription Factor Family AT1G51700 57.333 1.11e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi987g00008 zf-Dof 3.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi987g00008 - - gmx:100798927 326.635