Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi982g00003 ATGGATGATGTAGCAGGTTTGGTTGAGGCAGCAGGGTCGAGATTTAGTTCATTGGAGCTCATTGGACAAGGATCATTTGGCGACGTCTATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCAGAGGATGAAATTGAGGACATTCAGAAGGAAATCTCTGTTCTGTCACAATGTCGATCTCCGTACATTACTGACTATTATGGGTCCTTTCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGAGGCTCTGTTGCTGATCTACTCCAATCAGGTCCTCCACTTGATGAAATGTCAATTGCGTGCGTTCTACGTGACTTGCTTCATGCAATTGATTACCTACATAATGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGACTGAGACTGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACTAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCACCTGAGGTTATTCAAAACACAGAAGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGTATTACTGCAATTGAAATGGCAAAAGGGGAGCCACCACTTGCTGATCTTCATCCTATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCGCCGCAGCTAGATGAGCATTTTTCTCGTCCCATGAAAGAATTTGTTTCATTGTGTTTGAAGAAGGTTCCTGCCGAGAGGCCAAGTGCTAAGGAACTTCTCAAACACCGTTTCATTCGGAGTGCTAGGAAGAATCCAAAGCTTTTAGAGAGAATAAGGGAGCGACCAAAGTATCAAATAAAGGAAGATCCGGTGGAACCTAGAAATGGCCCGGGTGGAATAGGGGAGGCATCTGATACTATCAAGGTGGCAAGAGATTTAAGAAGTGAAGAAACTAATCAGCCCAGTGGTCAGGGTAAAACCCTGAAAAGTTCTGGGTGGGACTTCAGCATTGGGGGATCACAGGGTACTGGAACCTTTCGTAGTGTTTCACGACCACCTCAGTTTAGAGATAAGAAAGCTGAAGTTTCAAATCATCAGCTTAACCAAAGGAAAACTTCAGATAGTGGCTATCAAGAGGGATCTGCCATTAGAAGTGCCCTTAATGAGTCGCTAGAAACTTCTTTTAGAAAAGATCTCGGAGTTTCCTACCATGATGAGAATCCAGATAATCACCTTGAAGATGATGAATTGTCTGGGAATGGATCAGGAACTGTTGTTGTTAGGCCTCTCAAAGGATCACAGCCATCACTGTTTCGTGACCAAAGTTCTCTGTCTAGCAGCAGCTATGCTTCTTTTGAAGATTCTTCTACCAGTGGAACTGTTGTTTTGCGTAGTCAGCATGATGATTCTGATTCTCCACAGACACCAAGGTCCCGACTGGGACTTAATAGCAGAAATTCAAATGCCTCACTGGAAGATAGTGCTACAAATCTTGCTGAGGCAAAGGCAGCTATCCAAGGAGGATTAAAGAAAGTGAATGCTCGAGAGAGATTTGCACTTGGAAAACTCAACAATGATGTACAGGAAAGCAGGAGAGATGAAATGTCAAGCAGCTCTGATTCTTCCAGACCATCTCGTGAATACATTGATTCACAGAAAGGACTTTCAAGGTCTCATTATGCTAGTGATGATGAAGAAAGTTCCAAAATAATGTCATCCTCTCTGCCGTTATCTGTTTTGCTTATTCCTTCATTAAAAGAGGCCATTGCTGATGATCCAGAAGGGTCGGTCGTGCAATTTGTTATCAACTCACTTGTAAACATGGAGAGGACAAAGCCTAGATCCTGTGATGCCTTTGTCAAAAAGTTGCTTCAGCGGTTGGCAAGTTCAAAGGAGTCTTCATTGAAGGATCTGCAAGAACTGGCAGGCCAAATTTTCAGCAAAACCAATTCAACTGAAGAAACCCGAAATGCAGAGCCTGATAACAGGAAGAAACAACAGAACAAGGAAGTTCATTCAAATAGCAATTTAAGCCCACTTGCAAGATTTCTTCTTTCAAGATGGCAAGGCCAAACCTCACGGGATCTAAATCCAGCTTGA 2106 0.4221 MDDVAGLVEAAGSRFSSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITDYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACVLRDLLHAIDYLHNEGKIHRDIKAANILLTETGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIRSARKNPKLLERIRERPKYQIKEDPVEPRNGPGGIGEASDTIKVARDLRSEETNQPSGQGKTLKSSGWDFSIGGSQGTGTFRSVSRPPQFRDKKAEVSNHQLNQRKTSDSGYQEGSAIRSALNESLETSFRKDLGVSYHDENPDNHLEDDELSGNGSGTVVVRPLKGSQPSLFRDQSSLSSSSYASFEDSSTSGTVVLRSQHDDSDSPQTPRSRLGLNSRNSNASLEDSATNLAEAKAAIQGGLKKVNARERFALGKLNNDVQESRRDEMSSSSDSSRPSREYIDSQKGLSRSHYASDDEESSKIMSSSLPLSVLLIPSLKEAIADDPEGSVVQFVINSLVNMERTKPRSCDAFVKKLLQRLASSKESSLKDLQELAGQIFSKTNSTEETRNAEPDNRKKQQNKEVHSNSNLSPLARFLLSRWQGQTSRDLNPA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi982g00003 701 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi982g00003 701 SUPERFAMILY Protein kinase-like (PK-like) 12 268 IPR011009 -
Gabi982g00003 701 MobiDBLite consensus disorder prediction 318 352 - -
Gabi982g00003 701 MobiDBLite consensus disorder prediction 402 418 - -
Gabi982g00003 701 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Gabi982g00003 701 MobiDBLite consensus disorder prediction 528 568 - -
Gabi982g00003 701 MobiDBLite consensus disorder prediction 368 383 - -
Gabi982g00003 701 MobiDBLite consensus disorder prediction 656 672 - -
Gabi982g00003 701 MobiDBLite consensus disorder prediction 317 383 - -
Gabi982g00003 701 MobiDBLite consensus disorder prediction 648 680 - -
Gabi982g00003 701 MobiDBLite consensus disorder prediction 280 305 - -
Gabi982g00003 701 Gene3D Transferase(Phosphotransferase) domain 1 12 296 - -
Gabi982g00003 701 MobiDBLite consensus disorder prediction 525 571 - -
Gabi982g00003 701 Coils Coil 41 68 - -
Gabi982g00003 701 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi982g00003 701 CDD STKc_MST3_like 13 287 - -
Gabi982g00003 701 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 650 - -
Gabi982g00003 701 FunFam serine/threonine-protein kinase dst1 isoform X1 12 299 - -
Gabi982g00003 701 MobiDBLite consensus disorder prediction 402 495 - -
Gabi982g00003 701 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi982g00003 701 MobiDBLite consensus disorder prediction 437 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi982g00003 Gabi-Chr982 105524 136691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi982g00003 1 698 MAP Kinase Kinase Kinase Kinase AT3G15220 66.143 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Gabi982g00003 Pkinase 3.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi982g00003 K08838 - gmx:100786501 1179.85