Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi981g00005 ATGGAGAATATTGGTGATGAGTACAAGAATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGACAGCTGGGGATTGGATGAGGCCTTATCCGGTTACTATGATTCGAGTTCACCCGACGGCGCCGCTTCATCGGCGGCGTCTAAGAACATTGTCTCCGAGAGGAACCGGAGGAAGAAGCTCAATGAAAGGCTTTTTGCTCTTAGATCGGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCCATTGATTACATCCAGCACTTGCATGAGCAAGAGAAGACTATTCAAGCTGAGATAATGGAGCTTGAATCAGGGGTGATGAAGAAGAACCCAAGCTATGACTTTGAGCAGGAACTCCCTCTGCTTCTGAGGTCCAAGAAGAAAAGAACAGAGCAGCTACATGATTCTGTTACTTCTAGAAACTCCCCAATTGAAGTCCTTGAGCTCAGGGTTACATACATGGGAGAGAAAACTGTTGTTGTGAGCCTGACATGCAGCAAAAGGACAGATACAATGGTAAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTAAAGATCATTACAGCTAATATCACTTCGTTTTCAGGAAGGCTTTTGAAAACGGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATGATTTGCAGATAAAGATTCAGACAGCCATTGCAGCTCTTAATGATCCTCTAAGCCCTATGAGCATTTGA 729 0.4417 MENIGDEYKNYWETNMFLQTQELDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQHLHEQEKTIQAEIMELESGVMKKNPSYDFEQELPLLLRSKKKRTEQLHDSVTSRNSPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEEKDDLQIKIQTAIAALNDPLSPMSI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi981g00005 242 Gene3D - 44 112 IPR036638 GO:0046983
Gabi981g00005 242 SMART finulus 53 102 IPR011598 GO:0046983
Gabi981g00005 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Gabi981g00005 242 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Gabi981g00005 242 Coils Coil 212 232 - -
Gabi981g00005 242 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 114 - -
Gabi981g00005 242 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 225 - -
Gabi981g00005 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi981g00005 Gabi-Chr981 53781 62051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi981g00005 1 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 66.055 1.03e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi981g00005 CHGN 0.00027 CL0110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi981g00005 - - gmx:100817978 429.869