Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi981g00004 ATGGAGAATATTGGTGATGAGTACAAGAATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGACAGCTGGGGATTGGATGAGGCCTTATCCGGTTACTATGATTCGAGTTCACCCGACGGCGCCGCTTCATCGGCGGCGTCTAAGAACATTGTCTCCGAGAGGAACCGGAGGAAGAAGCTCAATGAAAGGCTTTTTGCTCTTAGATCGGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCCATTGATTACATCCAGCACTTGCATGAGCAAGAGAAGACTATTCAAGCTGAGATAATGGAGCTTGAATCAGGGGTGATGAAGAAGAACCCAAGCTATGACTTTGAGCAGGAACTCCCTCTGCTTCTGAGGTCCAAGAAGAAAAGAACAGAGCAGCTACATGATTCTGTTACTTCTAGAAACTCCCCAATTGAAGTCCTTGAGCTCAGGGTTACATACATGGGAGAGAAAACTGTTGTTGTGAGCCTGACATGCAGCAAAAGGACAGATACAATGGTAAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTAAAGATCATTACAGCTAATATCACTTCGTTTTCAGGAAGGCTTTTGAAAACGGTCTTCATTGAGGTTAGTCTTGCAAATGAAGAAGAGAAAGATGATTTGCAGATAAAGATTCAGACAGCCATTGCAGCTCTTAATGATCCTCTAAGCCCTATGAGCATTTGA 738 0.4404 MENIGDEYKNYWETNMFLQTQELDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQHLHEQEKTIQAEIMELESGVMKKNPSYDFEQELPLLLRSKKKRTEQLHDSVTSRNSPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEVSLANEEEKDDLQIKIQTAIAALNDPLSPMSI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi981g00004 245 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Gabi981g00004 245 SMART finulus 53 102 IPR011598 GO:0046983
Gabi981g00004 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Gabi981g00004 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 228 - -
Gabi981g00004 245 Gene3D - 44 112 IPR036638 GO:0046983
Gabi981g00004 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 114 - -
Gabi981g00004 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi981g00004 Gabi-Chr981 53776 62051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi981g00004 1 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.766 1.72e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi981g00004 HLH 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi981g00004 - - gmx:100817978 424.476