Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi981g00001 ATGACGGAGCAGACGAAGTTCAGCGTCGTCTGCAGCTTCTTCAAATGGACACAGAGAAGCAAATCGCCGGCGAAGAAGCGCTCCAAGTTCCGCAAGTTCCTCGACTCCTTCTGCAAAGACGGCAATTACTTCCCCGCCATTCGCCTGATTCTCCCCAATCTCGATCGCGAGCGTGGCTCCTACGGCCTCAAGGAGTCCGTGCTCGCCACCTCCCTCATCGATGCTCTCGGCATGTCCAAAGACTCCGACGACGCTCTTCGCCTCATCAATTGGCGCAAAGGCGGTGCAAAAACCGGTGCCAGTGCCGGTAACTTTGCACTTGTTGCCGCCGAGGTGCTGCAGCGTAGGCAAGGTTCGGCTTCCGGTGGATTAACAATAAAGGAGTTGAATGACTTGCTTGATCAGTTGTCTTCGAGTGAAAACAGGGCTCAGAAGACTTTGGTTCTTTCTACCCTTATACAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCCGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAAAAGCTAAGGGATCGGAATCAGCGTCATAAGCGGCAGGACATTGAAGTTGGAAAAGCTGTGCGCCCTCAATTAGCTAAGAGAGTTGCTAACGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGCTTGTTGAGTGCAAATTTGATGGTGACCGCATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAATTTTCTTGATCATTCTGAATATGCACATGCGATGTCAGAAATCATAATACAAAACGTTCTTGTAGAAAGGTGCATACTTGATGGCGAAATGTTGGTTTGGGATACATCCTTGAATCGATTTGCTGAGTTTGGGTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGTCTTGATAGTGATAGACAGTGGCTAGATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTTATTCACCAAACTTTGAAGGAAAGGCATGAGATTCTCCGGAAAGTTGTGAGGCCAATGAAGGGTTGTTTGGAAATTTTAGTACCTGATGGTGGTCTCAACAGTCATCGTTCTTCTGGTGAACTGTGTTGGTCATTTATTGCTCATAATGTGGATGAAGTTGAGAGGTTTTTCAAAGAAACCATTGAGAATAGAGATGAGGGAATTGTTGTAAAAGACCTCAGTTCCAAATGGGAACCTAGTGATCGCAGTGGAAAGTGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGTTCTGATCTTGATGTACTTATCATAGGCGGCTACTATGGCTCTGGACGACGGGGAGGAGAGGTTGCTCAATTCTTGGTAGGCCTCGCAGAGCGTCCATCCCCAAATACACATCCTAAGCGGTTTATCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCTGTAGTAACCAAACTAAAACCCTACTTCAGAAAGTATGAGCATCCAAGGAAGAGGCCACCAAGTTTTTACCAAGTTACTAATCATTCAAAAGAACGACCTGATGTGTGGATTGATAGCCCTGAGAAATCATTTATTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCCGCACCTTACAGCCTGAGATTTCCTCGGATTGACAGAGTTAGATATGACAAGGCTTGGCATGAATGCCTTGATGTGCAATCATTCATAGAACTAGTGCATTCTAGCAACGGTACCACACAGAGGGATACAGAATATGGCAGCAAGCAATACACTAAACCAAAACGCATGAAGTCCTCCATAAGGGGAGAAAAAAACATGTCCATTGTTCCTTCTCATTTAATTCAAACTGATGTTTCCAGTGTTAAGGGGGGTTCCCTAATATTTTCAAATATGATGTTTTACTTTGTCAATGTGCCTCCATCTCATTCTCTCAAGTCCTTACACCAAATAATTGCTGAGAATGGGGGAACTTTCTCGATGAATTTGAATAACTCCGTCACCCATTGTGTTGCAGCAGATAGCAAGGGATTTAAATTCGAAGCAGCAAAACGTCATGGTGATATCATTCATTATACTTGGGTATTAGATTGCTATGAACAAAAGAAGCTTGTCCGCTTACAGCCGAAGTACTTCCTCTTCCTATCTGAACTGACAAAGAAGAAATTACAAGAAGAAATTGATGAGTTCTCCGACTCTTACTACTTGGATCTCGATCTTGGAGACATAAAGCAGCTCTTAAGCAATATTCATAGGTCAGAAGATGTCAGCGTTGTTGATCATTACAGGAAAAAATACTGTCCAAAGGATAAGTGGTCCTTCTTTTATGGATGCTCCATTTATTTACACTCTGCAATACCATCATTGAAAGGAGATTGGGAAGTTCTATTGGGACTTGCTTTGAGGAGATTCAAACTTGAAATTCTCATGGGTGGTGGAAAAGTTACCGCTAATCTATCTTCTGCAACCCATTTAGTGGCCTTGTTTGTGCCAGGATATCATACCAACTTTCTAGATGAAATACAGAGAAGTTTCACTTCCGTAGAGAGAAAAATTCTCCGAAGCAAGAGGTTGCATATTGTTAAATCCCAGTGGTTAGAAGATTGTTTGGACAGTAGCCGAAGACTACCAGAAGACACTTATTGCTTGAAGCCCATTGGAATAGAAGAATCAACTGCTGAAGATTGTGAACATGACTTGGCGTTAGAGGCTCATCTGGGTGGAGAAAATGTAGAAGACCAAAATATATCTTTCTCTGACAAGGGAAGTAAACAGAGAAGTGCAAAATCTACTCCTGAAGATCTGGCTTTGGTGTCCCAAGAGAAGGGTGGCCAAAGGAAAAGAGGAAGACCTGCAGGTGGTGGTACCAAAAAGGTGAAAATAGCTGGCAACCAAGCTCGAAGAGCACGAGCACAGATTGTGAAAAAGCGTGCTAAAATATGTGAATATGAATCAGATGAAAGTGATTCTCGTGACAAAAAACCGTATGAACAGGACATTGACACTAGAGAAGGAAGTCCTTATTTTAACAAGAAACATTCAGAACTCCAGGATACTGAGAAACGCTCAAATGTCCCAGTTAAGGAAACAGCAGAAAGTTCTGAACATCACAAGGCAATCAAGCAAGAGGATTTGAAGGACAGTGAACATGAAAGTATGTTTGTCCCCGAAATTGAAATGACTGATAGGCACAATGACCAAAACACGCAGGTGACTGAGAAACTTGAAATTTTGGCTGATCCAGTGCAAGCGATGTTATTTAACATGATTCCTAGCCTTGCCCCGAAGAAAGTTGAGCAAACTATGAATCGTGATATTGGAGAAGAGAAGCTACCAGATATCTCCAATGCAGAGCCTTCAACTACAAAGAAAAAGAAAGTTAGCTATAAGGATGTTGCTGGCGAGCTGCTCAAGGATTGGTAG 3501 0.423 MTEQTKFSVVCSFFKWTQRSKSPAKKRSKFRKFLDSFCKDGNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMSKDSDDALRLINWRKGGAKTGASAGNFALVAAEVLQRRQGSASGGLTIKELNDLLDQLSSSENRAQKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVLVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIIQNVLVERCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQWLDVAFDILYFGDTSVIHQTLKERHEILRKVVRPMKGCLEILVPDGGLNSHRSSGELCWSFIAHNVDEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDAVVTKLKPYFRKYEHPRKRPPSFYQVTNHSKERPDVWIDSPEKSFILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVHSSNGTTQRDTEYGSKQYTKPKRMKSSIRGEKNMSIVPSHLIQTDVSSVKGGSLIFSNMMFYFVNVPPSHSLKSLHQIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYTWVLDCYEQKKLVRLQPKYFLFLSELTKKKLQEEIDEFSDSYYLDLDLGDIKQLLSNIHRSEDVSVVDHYRKKYCPKDKWSFFYGCSIYLHSAIPSLKGDWEVLLGLALRRFKLEILMGGGKVTANLSSATHLVALFVPGYHTNFLDEIQRSFTSVERKILRSKRLHIVKSQWLEDCLDSSRRLPEDTYCLKPIGIEESTAEDCEHDLALEAHLGGENVEDQNISFSDKGSKQRSAKSTPEDLALVSQEKGGQRKRGRPAGGGTKKVKIAGNQARRARAQIVKKRAKICEYESDESDSRDKKPYEQDIDTREGSPYFNKKHSELQDTEKRSNVPVKETAESSEHHKAIKQEDLKDSEHESMFVPEIEMTDRHNDQNTQVTEKLEILADPVQAMLFNMIPSLAPKKVEQTMNRDIGEEKLPDISNAEPSTTKKKKVSYKDVAGELLKDW 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi981g00001 1166 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Gabi981g00001 1166 ProSiteProfiles BRCT domain profile. 650 738 IPR001357 -
Gabi981g00001 1166 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi981g00001 1166 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gabi981g00001 1166 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Gabi981g00001 1166 ProSiteProfiles ATP-dependent DNA ligase family profile. 340 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gabi981g00001 1166 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Gabi981g00001 1166 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Gabi981g00001 1166 NCBIfam ATP-dependent DNA ligase 61 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Gabi981g00001 1166 Gene3D BRCT domain 665 778 IPR036420 -
Gabi981g00001 1166 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Gabi981g00001 1166 MobiDBLite consensus disorder prediction 937 996 - -
Gabi981g00001 1166 CDD OBF_DNA_ligase_IV 448 592 - -
Gabi981g00001 1166 SMART BRCT_7 652 728 IPR001357 -
Gabi981g00001 1166 SMART BRCT_7 798 899 IPR001357 -
Gabi981g00001 1166 FunFam DNA ligase 1 218 - -
Gabi981g00001 1166 MobiDBLite consensus disorder prediction 1008 1074 - -
Gabi981g00001 1166 FunFam DNA ligase 444 605 - -
Gabi981g00001 1166 Gene3D - 444 605 IPR012340 -
Gabi981g00001 1166 MobiDBLite consensus disorder prediction 1132 1154 - -
Gabi981g00001 1166 FunFam DNA ligase 220 443 - -
Gabi981g00001 1166 MobiDBLite consensus disorder prediction 938 960 - -
Gabi981g00001 1166 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Gabi981g00001 1166 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi981g00001 1166 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Gabi981g00001 1166 Gene3D BRCT domain 796 909 IPR036420 -
Gabi981g00001 1166 SUPERFAMILY BRCT domain 654 739 IPR036420 -
Gabi981g00001 1166 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gabi981g00001 1166 SUPERFAMILY BRCT domain 786 911 IPR036420 -
Gabi981g00001 1166 CDD BRCT_DNA_ligase_IV_rpt1 654 740 - -
Gabi981g00001 1166 ProSiteProfiles BRCT domain profile. 796 909 IPR001357 -
Gabi981g00001 1166 PANTHER DNA LIGASE 4 3 1159 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Gabi981g00001 1166 Coils Coil 126 146 - -
Gabi981g00001 1166 FunFam DNA ligase 665 779 - -
Gabi981g00001 1166 Pfam BRCT domain, a BRCA1 C-terminus domain 652 735 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi981g00001 214 601 Core DNA Replication Machinery Family AT1G08130 27.723 4.64e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi981g00001 K10777 - gmx:100816002 1966.43