Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi980g00020 ATGGGTGTCTCGCAATTATTCGATAAAATCTCAGCTTCAACATCTTCATCTTCTTATTCAGGATCCTTGAATGTCCTTTTGAGCACGATCCTAGGATTGCCCGTGTTGGAACTTGCTGCTGTCTGTGTGAACCTAACTCTTGTTCTTTTGTTTCTCTTTGTTGTCTCGGTGAGACGGATTCTTGTGTTCGAGGGTCGAATTGGAAATGGTAAGGACAATAACAGCGGCAATGCCAGCCCAATTCGTCGTGGTAATAATGGCGAAATAGGTGATGTTCGAATCGGTGCAGGGTTCAAGTTCTCAGTGTTGTCTTGTTTCTATGTTCTGTTTGTGCAAGTTTTGGTCTTGGGGTTTGACGGGGGTGCTTTGATTTGGGGTGAGGCTAATGGGAAAGGTGTGGACTGGCCTCTTCTTTCTGTGCCAGCTGCACAGGGTTTAGCTTGGTTTGTGTTGAGCTTCTCGGCTTTGTATTGCAAATTTAAGGTGTCAGAGAAGTTTCCATTTTTGTTGAGGGTTTGGTGGTTTTTGTCATTTGTTATTTGCTTGTGTACTTTATATGTTGATGGGAGAGGATTTTGGGTGGAAGGTTCCAAGAGCATATGTTCTCATGCTGTTGCAAATATTGCTGTCACCCCAGCTCTTGCCTTTTTGTGTATAGTTGCAATTAGGGGGGTTACTGGTATACATGTTTGTAGGAACCCTGATCTTCAAGAGCCATTACTTATTGAAGAAGAACCGGGTTGTCTCAAGGTTACTCCTTACAGGGATGCTGGACTTTTTAGTTTGGCTACTCTTTCATGGCTGAACCCACTTCTTTCCCTTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCCCTTGTTGCAAAAAAGGATCGAGCCAAGACCAGTTATAAGGTTTTGAATTCTAATTGGGAGAGACTGAAGGCTGAAAACCCCTCCAAACAGCCTTCATTAGCTTGGGCAATTCTCAAGTCATTCTGGAAGGAAGCAGCTCTGAATGCTATCTTTGCTGGTGTGAATACTTTGGTTTCATATGTAGGTCCATACATGATAAGTTACTTTGTTGATTACTTGGGTGGTAAAGAAACTTTCCCTCACGAGGGTTATATTCTTGCGGGTATATTTTTTGTGTCGAAGCTTGTGGAGACCTTGACAACTCGGCAGTGGTATCTAGGAGTGGACATCTTGGGTATGCATGTGAGGTCAGCTCTAACTGCAATGGTATATCGAAAGGGACTCAGACTCTCAAGCTCAGCCAAGCAAAGTCACACAAGTGGGGAAATTGTTAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTACTCTTGGTATCTTCATGATATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGTAATTTTGTATAAGAATGTTGGAATTGCTTTTGTTGCAACATTGATTGCTACTATCATTTCCATTGTTGCCACTGTTCCTGTGGCTAGGATACAAGAAGATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCCGAGTGTTTGAGGAATATGAGGATTCTCAAGCTACAAGCTTGGGAGGACAGATATCGAATAAAATTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTACGAAAAGCACTCTATTCTCAGGCCTTCATAACTTTCATATTTTGGAGCTCCCCTATATTTGTTTCAGTGGTCACTTTTGCTACTTCCATATTTTTGGGAGGTCAGCTCACTGCAGGTGGTGTTCTCTCTGCTCTAGCTACTTTCAGGATCCTCCAAGAACCACTGCGAAATTTTCCTGACTTGGTATCAACGATGGCTCAGACAAAAGTTTCTCTTGATCGTATATCTGGTTTCCTGCAGGATGAAGAATTGCAGGAAGATGCAACTATGGTCTTGCCACGTGGCATTTCTAACATAGCCGTAGAAATTAAGGACGGTGTCTTCTGCTGGGACCCTTCTTCATCTAGGCCTACTTTATCAGGAATACATATGAAAGTGGAAAGGGGGATGAGGGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTTTCTGGTGAAGTAAGAGTGTGTGGCTCTGCTGCATATGTCTCCCAATCAGCATGGATACAGTCAGGAAATATAGAAGAAAATATCCTGTTTGGAAACCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGATCTAGAACTTTTCTCTCATGGTGACCAAACAATTATTGGTGATAGAGGTATAAACTTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATGTTTATCTCCTTGACGATCCCTTCAGCGCAGTTGATGCCCACACTGGATCAGAATTGTTTAGGGAGTATATATTGACGGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATATTATACTGGTTCTTAAAGAAGGCAACATCATACAAGCAGGAAAATATGATGAACTTTTACAAGCAGGAACAGATTTTAACGCTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTACTCACTCCTCAGAAGATTCAGATGAGAACGTGTGCTTGGATGTATCTGTTATGACCGACAAGAAATCCTTTTCTTCTGAAAATGACATTGAAAGTTTGGCAAAGGAAGTTCAAGAGGGATCGTCAGATCAGAAAGCAATTAAGGAGAAGAAGAAAGCAAAACGCTCAAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTAAGAGGTAGAGTCAACATGAAGGTGTACTTGTCGTACATGGCTGCAGCATATAAAGGCTTATTGATTCCACTCATAATCATTGCACAAGCATTATTTCAGTTCCTTCAGATTGCTAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACAGAGGGAGACCAACCCAAAGTAACTCCCATGGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCATTGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACATTTGGTCTAGCAGCTGCACAGAAGCTATTTTTCAATATGCTTAGAAGTATTTTCCATGCACCTATGTCTTTCTTTGACTCTACACCAGCCGGAAGGATCTTGAATCGTGTTTCAATTGATCAAAGTGTGGTCGATCTTGACATTCCTTTTAGACTTGGAGGGTTTGCTTCAACAACAATACAGCTTATCGGCATTGTTGCTGTAATGACAGATGTTACATGGCAAGTTTTGCTCCTAGTAGTCCCAATGGCCGGTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATTCATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTTTGGATTGTTTTGCACGGCCATTCTTCTGCAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGAATGGAATTACTTTCAACCTTCGTATTTGCTTTCTGCATGGTATTACTTGTGAGCTTTCCCCATGGAAGTATTGACCCCAGCATGGCTGGACTTGCTGTGACGTATGGCTTGAATTTAAATGCACGTCTATCGCGATGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAAAGAATTTATCAATACAGCCAAGTACCTAGTGAAGCACCAGCAATTATTGAAGATTCTCACCCTCCATCCTCATGGCCTGAGAATGGGACAATCCAATTAATTGATCTGAAGGTCCGGTACAAGGAAAGTCTTCCTTTGGTGCTTCGTGGAATATCCTGCACATTTCCTGGTGGGAAGAAAATTGGAATAGTTGGACGTACTGGCAGTGGCAAATCTACTTTGATTCAAGCATTATTTCGATTGGTTGAACCGGCAAGTGGGTCTATCCTTATAGACAACATTAATATTTCAGGGATTGGCCTTCATGACCTACGAAGCCATCTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGATCCTCTTGAAGAGCATTCTGATAAAGAAATTTGGGAGGCACTAGATAAGTCTCAGCTTGGAGAGATACGTGAGAAAGGACAAAAGCTTGAAACACCAGATAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTGGGCAGAGCTCTGCTCAAAAAGTCAAAGATACTTGTACTTGATGAAGCAACAGCATCAGTTGATACTGCTACTGATAATCTTATCCAGAAGATTATTCGAAAAGAGTTCAAGGACTGTACTGTATGCACCATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTGGTTCTGGTACTCAGTGATGGTCGAGTAGCAGAGTTTGACACTCCATTACGGTTATTAGAGGATAAGTCATCCATGTTTCTGAAGTTGGTGTCTGAATATTCGTCGCGGTCAAGTGGCATGTCAGATTTTTAA 4590 0.4227 MGVSQLFDKISASTSSSSYSGSLNVLLSTILGLPVLELAAVCVNLTLVLLFLFVVSVRRILVFEGRIGNGKDNNSGNASPIRRGNNGEIGDVRIGAGFKFSVLSCFYVLFVQVLVLGFDGGALIWGEANGKGVDWPLLSVPAAQGLAWFVLSFSALYCKFKVSEKFPFLLRVWWFLSFVICLCTLYVDGRGFWVEGSKSICSHAVANIAVTPALAFLCIVAIRGVTGIHVCRNPDLQEPLLIEEEPGCLKVTPYRDAGLFSLATLSWLNPLLSLGAKRPLELKDIPLVAKKDRAKTSYKVLNSNWERLKAENPSKQPSLAWAILKSFWKEAALNAIFAGVNTLVSYVGPYMISYFVDYLGGKETFPHEGYILAGIFFVSKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALVILYKNVGIAFVATLIATIISIVATVPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSVVTFATSIFLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQDEELQEDATMVLPRGISNIAVEIKDGVFCWDPSSSRPTLSGIHMKVERGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGNPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTGSELFREYILTALADKTVIFVTHQVEFLPAADIILVLKEGNIIQAGKYDELLQAGTDFNALVSAHHEAIEAMDIPTHSSEDSDENVCLDVSVMTDKKSFSSENDIESLAKEVQEGSSDQKAIKEKKKAKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDQPKVTPMVLLLVYMALAFGSSLFIFVRAVLVATFGLAAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVAVMTDVTWQVLLLVVPMAGVCLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQVPSEAPAIIEDSHPPSSWPENGTIQLIDLKVRYKESLPLVLRGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPASGSILIDNINISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIREKGQKLETPDNWSVGQRQLVSLGRALLKKSKILVLDEATASVDTATDNLIQKIIRKEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPLRLLEDKSSMFLKLVSEYSSRSSGMSDF 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi980g00020 1529 FunFam ABC transporter C family member 5 933 1270 - -
Gabi980g00020 1529 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1289 1517 IPR003439 GO:0005524
Gabi980g00020 1529 CDD ABC_6TM_ABCC_D2 970 1264 IPR044726 GO:0140359
Gabi980g00020 1529 Gene3D - 1272 1518 IPR027417 -
Gabi980g00020 1529 FunFam ABC transporter C family member 3 1272 1518 - -
Gabi980g00020 1529 CDD ABCC_MRP_domain2 1287 1501 - -
Gabi980g00020 1529 CDD ABCC_MRP_domain1 646 845 - -
Gabi980g00020 1529 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 646 869 IPR003439 GO:0005524
Gabi980g00020 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 868 IPR027417 -
Gabi980g00020 1529 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 254 1520 - -
Gabi980g00020 1529 Gene3D ABC transporter type 1, transmembrane domain 931 1270 IPR036640 GO:0005524|GO:0016020
Gabi980g00020 1529 Gene3D ABC transporter type 1, transmembrane domain 302 629 IPR036640 GO:0005524|GO:0016020
Gabi980g00020 1529 CDD ABC_6TM_ABCC_D1 333 620 IPR044746 GO:0140359
Gabi980g00020 1529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 332 612 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi980g00020 1529 Gene3D - 641 874 IPR027417 -
Gabi980g00020 1529 SUPERFAMILY ABC transporter transmembrane region 969 1269 IPR036640 GO:0005524|GO:0016020
Gabi980g00020 1529 Coils Coil 927 947 - -
Gabi980g00020 1529 Pfam ABC transporter transmembrane region 972 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi980g00020 1529 Pfam ABC transporter transmembrane region 335 600 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi980g00020 1529 Pfam ABC transporter 1306 1448 IPR003439 GO:0005524
Gabi980g00020 1529 ProSitePatterns ABC transporters family signature. 771 785 IPR017871 GO:0005524|GO:0016887
Gabi980g00020 1529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 972 1242 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi980g00020 1529 Pfam ABC transporter 664 798 IPR003439 GO:0005524
Gabi980g00020 1529 FunFam ABC transporter C family member 10 315 628 - -
Gabi980g00020 1529 SMART AAA_5 1315 1494 IPR003593 GO:0016887
Gabi980g00020 1529 SMART AAA_5 673 854 IPR003593 GO:0016887
Gabi980g00020 1529 FunFam ABC transporter C family member 5 631 878 - -
Gabi980g00020 1529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1279 1513 IPR027417 -
Gabi980g00020 1529 SUPERFAMILY ABC transporter transmembrane region 321 628 IPR036640 GO:0005524|GO:0016020
Gabi980g00020 1529 MobiDBLite consensus disorder prediction 918 941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi980g00020 Gabi-Chr980 150901 159627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi980g00020 646 862 Calmodulin-binding Proteins AT2G36910 30.508 7.93e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi980g00020 - - gmx:100781010 2642.07