Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi980g00019 ATGGGTGTCTCGCAATTATTCGATAAAATCTCAGCTTCAACATCTTCATCTTCTTATTCAGGATCCTTGAATGTCCTTTTGAGCACGATCCTAGGATTGCCCGTGTTGGAACTTGCTGCTGTCTGTGTGAACCTAACTCTTGTTCTTTTGTTTCTCTTTGTTGTCTCGGTGAGACGGATTCTTGTGTTCGAGGGTCGAATTGGAAATGGTAAGGACAATAACAGCGGCAATGCCAGCCCAATTCGTCGTGGTAATAATGGCGAAATAGGTGATGTTCGAATCGGTGCAGGGTTCAAGTTCTCAGTGTTGTCTTGTTTCTATGTTCTGTTTGTGCAAGTTTTGGTCTTGGGGTTTGACGGGGGTGCTTTGATTTGGGGTGAGGCTAATGGGAAAGGTGTGGACTGGCCTCTTCTTTCTGTGCCAGCTGCACAGGGTTTAGCTTGGTTTGTGTTGAGCTTCTCGGCTTTGTATTGCAAATTTAAGGTGTCAGAGAAGTTTCCATTTTTGTTGAGGGTTTGGTGGTTTTTGTCATTTGTTATTTGCTTGTGTACTTTATATGTTGATGGGAGAGGATTTTGGGTGGAAGGTTCCAAGAGCATATGTTCTCATGCTGTTGCAAATATTGCTGTCACCCCAGCTCTTGCCTTTTTGTGTATAGTTGCAATTAGGGGGGTTACTGGTATACATGTTTGTAGGAACCCTGATCTTCAAGAGCCATTACTTATTGAAGAAGAACCGGGTTGTCTCAAGGTTACTCCTTACAGGGATGCTGGACTTTTTAGTTTGGCTACTCTTTCATGGCTGAACCCACTTCTTTCCCTTGGTGCAAAGAGACCGCTTGAGCTTAAGGACATTCCCCTTGTTGCAAAAAAGGATCGAGCCAAGACCAGTTATAAGGTTTTGAATTCTAATTGGGAGAGACTGAAGGCTGAAAACCCCTCCAAACAGCCTTCATTAGCTTGGGCAATTCTCAAGTCATTCTGGAAGGAAGCAGCTCTGAATGCTATCTTTGCTGGTGTGAATACTTTGGTTTCATATGTAGGTCCATACATGATAAGTTACTTTGTTGATTACTTGGGTGGTAAAGAAACTTTCCCTCACGAGGGTTATATTCTTGCGGGTATATTTTTTGTGTCGAAGCTTGTGGAGACCTTGACAACTCGGCAGTGGTATCTAGGAGTGGACATCTTGGGTATGCATGTGAGGTCAGCTCTAACTGCAATGGTATATCGAAAGGGACTCAGACTCTCAAGCTCAGCCAAGCAAAGTCACACAAGTGGGGAAATTGTTAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTACTCTTGGTATCTTCATGATATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGTAATTTTGTATAAGAATGTTGGAATTGCTTTTGTTGCAACATTGATTGCTACTATCATTTCCATTGTTGCCACTGTTCCTGTGGCTAGGATACAAGAAGATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCCGAGTGTTTGAGGAATATGAGGATTCTCAAGCTACAAGCTTGGGAGGACAGATATCGAATAAAATTGGAGGAAATGCGTGGAGTAGAGTTCGGAGGTCAGCTCACTGCAGGTGGTGTTCTCTCTGCTCTAGCTACTTTCAGGATCCTCCAAGAACCACTGCGAAATTTTCCTGACTTGGTATCAACGATGGCTCAGACAAAAGTTTCTCTTGATCGTATATCTGGTTTCCTGCAGGATGAAGAATTGCAGGAAGATGCAACTATGGTCTTGCCACGTGGCATTTCTAACATAGCCGTAGAAATTAAGGACGGTGTCTTCTGCTGGGACCCTTCTTCATCTAGGCCTACTTTATCAGGAATACATATGAAAGTGGAAAGGGGGATGAGGGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTTTCTGGTGAAGTAAGAGTGTGTGGCTCTGCTGCATATGTCTCCCAATCAGCATGGATACAGTCAGGAAATATAGAAGAAAATATCCTGTTTGGAAACCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGATCTAGAACTTTTCTCTCATGGTGACCAAACAATTATTGGTGATAGAGGTATAAACTTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATGTTTATCTCCTTGACGATCCCTTCAGCGCAGTTGATGCCCACACTGGATCAGAATTGTTTAGGGAGTATATATTGACGGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATATTATACTGGTTCTTAAAGAAGGCAACATCATACAAGCAGGAAAATATGATGAACTTTTACAAGCAGGAACAGATTTTAACGCTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTACTCACTCCTCAGAAGATTCAGATGAGAACGTGTGCTTGGATGTATCTGTTATGACCGACAAGAAATCCTTTTCTTCTGAAAATGACATTGAAAGTTTGGCAAAGGAAGTTCAAGAGGGATCGTCAGATCAGAAAGCAATTAAGGAGAAGAAGAAAGCAAAACGCTCAAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTAAGAGGTAGAGTCAACATGAAGGTGTACTTGTCGTACATGGCTGCAGCATATAAAGGCTTATTGATTCCACTCATAATCATTGCACAAGCATTATTTCAGTTCCTTCAGATTGCTAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACAGAGGGAGACCAACCCAAAGTAACTCCCATGGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCATTGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACATTTGGTCTAGCAGCTGCACAGAAGCTATTTTTCAATATGCTTAGAAGTATTTTCCATGCACCTATGTCTTTCTTTGACTCTACACCAGCCGGAAGGATCTTGAATCGTGTTTCAATTGATCAAAGTGTGGTCGATCTTGACATTCCTTTTAGACTTGGAGGGTTTGCTTCAACAACAATACAGCTTATCGGCATTGTTGCTGTAATGACAGATGTTACATGGCAAGTTTTGCTCCTAGTAGTCCCAATGGCCGGTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGTATTGTAAGCATCCAGAAATCTCCAATTATTCATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTTTGGATTGTTTTGCACGGCCATTCTTCTGCAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGAATGGAATTACTTTCAACCTTCGTATTTGCTTTCTGCATGGTATTACTTGTGAGCTTTCCCCATGGAAGTATTGACCCCAGCATGGCTGGACTTGCTGTGACGTATGGCTTGAATTTAAATGCACGTCTATCGCGATGGATACTTAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAAAGAATTTATCAATACAGCCAAGTACCTAGTGAAGCACCAGCAATTATTGAAGATTCTCACCCTCCATCCTCATGGCCTGAGAATGGGACAATCCAATTAATTGATCTGAAGGTCCGGTACAAGGAAAGTCTTCCTTTGGTGCTTCGTGGAATATCCTGCACATTTCCTGGTGGGAAGAAAATTGGAATAGTTGGACGTACTGGCAGTGGCAAATCTACTTTGATTCAAGCATTATTTCGATTGGTTGAACCGGCAAGTGGGTCTATCCTTATAGACAACATTAATATTTCAGGGATTGGCCTTCATGACCTACGAAGCCATCTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGATCCTCTTGAAGAGCATTCTGATAAAGAAATTTGGGAGGCACTAGATAAGTCTCAGCTTGGAGAGATACGTGAGAAAGGACAAAAGCTTGAAACACCAGTGCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTGGGCAGAGCTCTGCTCAAAAAGTCAAAGATACTTGTACTTGATGAAGCAACAGCATCAGTTGATACTGCTACTGATAATCTTATCCAGAAGATTATTCGAAAAGAGTTCAAGGACTGTACTGTATGCACCATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTGGTTCTGGTACTCAGTGATGGTCGAGTAGCAGAGTTTGACACTCCATTACGGTTATTAGAGGATAAGTCATCCATGTTTCTGAAGTTGGTGTCTGAATATTCGTCGCGGTCAAGTGGCATGTCAGATTTTTAA 4500 0.4236 MGVSQLFDKISASTSSSSYSGSLNVLLSTILGLPVLELAAVCVNLTLVLLFLFVVSVRRILVFEGRIGNGKDNNSGNASPIRRGNNGEIGDVRIGAGFKFSVLSCFYVLFVQVLVLGFDGGALIWGEANGKGVDWPLLSVPAAQGLAWFVLSFSALYCKFKVSEKFPFLLRVWWFLSFVICLCTLYVDGRGFWVEGSKSICSHAVANIAVTPALAFLCIVAIRGVTGIHVCRNPDLQEPLLIEEEPGCLKVTPYRDAGLFSLATLSWLNPLLSLGAKRPLELKDIPLVAKKDRAKTSYKVLNSNWERLKAENPSKQPSLAWAILKSFWKEAALNAIFAGVNTLVSYVGPYMISYFVDYLGGKETFPHEGYILAGIFFVSKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALVILYKNVGIAFVATLIATIISIVATVPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEEMRGVEFGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQDEELQEDATMVLPRGISNIAVEIKDGVFCWDPSSSRPTLSGIHMKVERGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGNPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTGSELFREYILTALADKTVIFVTHQVEFLPAADIILVLKEGNIIQAGKYDELLQAGTDFNALVSAHHEAIEAMDIPTHSSEDSDENVCLDVSVMTDKKSFSSENDIESLAKEVQEGSSDQKAIKEKKKAKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDQPKVTPMVLLLVYMALAFGSSLFIFVRAVLVATFGLAAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVAVMTDVTWQVLLLVVPMAGVCLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQVPSEAPAIIEDSHPPSSWPENGTIQLIDLKVRYKESLPLVLRGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPASGSILIDNINISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIREKGQKLETPVLENGDNWSVGQRQLVSLGRALLKKSKILVLDEATASVDTATDNLIQKIIRKEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPLRLLEDKSSMFLKLVSEYSSRSSGMSDF 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi980g00019 1499 CDD ABCC_MRP_domain2 1252 1471 - -
Gabi980g00019 1499 ProSitePatterns ABC transporters family signature. 736 750 IPR017871 GO:0005524|GO:0016887
Gabi980g00019 1499 FunFam ABC transporter C family member 10 315 544 - -
Gabi980g00019 1499 Gene3D - 606 839 IPR027417 -
Gabi980g00019 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 833 IPR027417 -
Gabi980g00019 1499 Gene3D - 1237 1488 IPR027417 -
Gabi980g00019 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 611 834 IPR003439 GO:0005524
Gabi980g00019 1499 SMART AAA_5 1280 1464 IPR003593 GO:0016887
Gabi980g00019 1499 SMART AAA_5 638 819 IPR003593 GO:0016887
Gabi980g00019 1499 Gene3D ABC transporter type 1, transmembrane domain 302 594 IPR036640 GO:0005524|GO:0016020
Gabi980g00019 1499 Gene3D ABC transporter type 1, transmembrane domain 896 1235 IPR036640 GO:0005524|GO:0016020
Gabi980g00019 1499 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 255 1490 - -
Gabi980g00019 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1254 1487 IPR003439 GO:0005524
Gabi980g00019 1499 Coils Coil 892 912 - -
Gabi980g00019 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 332 538 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi980g00019 1499 SUPERFAMILY ABC transporter transmembrane region 934 1234 IPR036640 GO:0005524|GO:0016020
Gabi980g00019 1499 Pfam ABC transporter 1271 1418 IPR003439 GO:0005524
Gabi980g00019 1499 CDD ABCC_MRP_domain1 611 810 - -
Gabi980g00019 1499 Pfam ABC transporter transmembrane region 937 1179 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi980g00019 1499 Pfam ABC transporter transmembrane region 335 538 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi980g00019 1499 SUPERFAMILY ABC transporter transmembrane region 321 593 IPR036640 GO:0005524|GO:0016020
Gabi980g00019 1499 FunFam ABC transporter C family member 5 596 843 - -
Gabi980g00019 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1244 1483 IPR027417 -
Gabi980g00019 1499 CDD ABC_6TM_ABCC_D2 935 1229 IPR044726 GO:0140359
Gabi980g00019 1499 MobiDBLite consensus disorder prediction 883 906 - -
Gabi980g00019 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 937 1207 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi980g00019 1499 FunFam ABC transporter C family member 5 898 1235 - -
Gabi980g00019 1499 FunFam ABC transporter C family member 3 1237 1488 - -
Gabi980g00019 1499 Pfam ABC transporter 629 763 IPR003439 GO:0005524
Gabi980g00019 1499 CDD ABC_6TM_ABCC_D1 333 585 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi980g00019 Gabi-Chr980 150901 159627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi980g00019 611 827 Calmodulin-binding Proteins AT2G36910 30.508 1.06e-19 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi980g00019 - - gmx:100781010 2579.28