Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi980g00014 ATGTCAACTTTGTCTAAAGATGATAACTTGGTGCTCTCTTCTGAGGATTCTTCATGCCCAGATGAATCTGAGCTTGAATTGGGACTTGGGTTAAGCCTTTCTCACAACCCTGCACCTCCAACAAAGTCACATCATCATGCTAGAATCTTCACTGCTAAGGATTTTCCTTCTTCAGCAGCAGCATCACCATCCTCTTCTTCCTCCTCGGCCAACGTTACAGCTGGGACCAAGAGACCTGGTGATTCTCTTGTTGCTAATAACCGTCCCAGTCAGGTAGTTGGATGGCCTCCCCTTCGAACATATAGAATGAATAGCTTTAACAGCCATGTAAAATCAACTGAAGCATTCAACTCTATGGCTGAGAAGACTAAGAGCAATAATACTGTGGTAAGGAAGAGTGCTGACATTGGCAATGATGATAACAACATTAATTTCAAAGAAAAAAGACACCTCAGGAGTTCCCTGATGGTCAAGGTAAATATGGATGGGATACCGATTGGAAGGAAGGTTGATTTAAGAGTTCATAGTGCTTATGAAACCTTAGCACAAACCTTGGAGGATATGTTCAATGCATCAACTCCTTTCATAACTTGCAAAGGATCAAATGGGGAGGATCATGGCATTATTATTGGAGGAGAAAAACATTCGAAATTGTTGGATGGATCTTCCAAGTTTGTCCTCACTTATGAAGATAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGGACCAAGATTGGAAGAAAAGAACTGCAGACAGAAAAGCAAGCCCATATAG 846 0.4243 MSTLSKDDNLVLSSEDSSCPDESELELGLGLSLSHNPAPPTKSHHHARIFTAKDFPSSAAASPSSSSSSANVTAGTKRPGDSLVANNRPSQVVGWPPLRTYRMNSFNSHVKSTEAFNSMAEKTKSNNTVVRKSADIGNDDNNINFKEKRHLRSSLMVKVNMDGIPIGRKVDLRVHSAYETLAQTLEDMFNASTPFITCKGSNGEDHGIIIGGEKHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLGPRLEEKNCRQKSKPI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi980g00014 281 ProSiteProfiles PB1 domain profile. 154 261 IPR000270 GO:0005515
Gabi980g00014 281 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 264 IPR003311 GO:0005634|GO:0006355
Gabi980g00014 281 MobiDBLite consensus disorder prediction 1 90 - -
Gabi980g00014 281 Pfam AUX/IAA family 48 268 IPR033389 -
Gabi980g00014 281 MobiDBLite consensus disorder prediction 57 76 - -
Gabi980g00014 281 Gene3D - 149 270 - -
Gabi980g00014 281 MobiDBLite consensus disorder prediction 1 18 - -
Gabi980g00014 281 SUPERFAMILY CAD & PB1 domains 150 257 - -
Gabi980g00014 281 FunFam Auxin-responsive protein 149 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi980g00014 Gabi-Chr980 111837 115893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi980g00014 147 268 B3 DNA Binding Superfamily AT1G59750 33.607 4.01e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi980g00014 AUX_IAA 5.6e-60 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi980g00014 K14484 - gmx:100779400 423.705