Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi980g00006 ATGGCACCCAATGCAAGAGTGGTAGCGGCCTACCGTGCAATGTCAGTTATTGGGATTGGTGAATCGAAAGTGAAACCAGTATTAAAGAAACTCCTGAAGTTGTATGATAAGAATTGGGAACTTATTGAGGAAGAAAACTATAGAGCTCTGGCAGATGCTATATTTGAGGACGATGAAAATGAGGTGCCAGAACAGAAAAAGAAAACCAAGAAAGTTGATGAAGAAGAGATGGAGGTCGACGAAGAACAGATGCATGTTGAAGAAGCCCGACCTTTGAAAAGGTTGCGTTTAAGAGGTCAAGAGAGTCAGCCTTTGCATCCTCTGACTAATAGTGCCCCCAGCTCAGATACCCCTCCATTAAAAAAGCCAAAATTAGAAGACAACACATTATCCGAGAGTCGTTCTAGACAGCAGTCTCAAAAGAAAATATTCTCATCCGATGGAAATGCGAGGATTGAAGCACTCCCAATTCCAACACGAGATGGTATTGTTGACAGGGGAAAGCAACCTGCATCATCACAAGTTACCCGCAGCAAAAGAAGATTTATGTCTGAAAGAGCATCCCCATCAGGACCATCTAAAGAACCAACAGTTGAAACTGGAAAGTTTCTGTTGCCAAACAACAGAATGCCTGGTATTCATACGCTGATCATACCCAAGGATGAGCCTGTTGATGAATTGCTTGATTATGAGGTTCCCCGTCCCATTGCAGTGATTCCTCCTGAATCATCAAGTGTAAGGGTCTCATCAATGAAGAATGGTGCAGCTGGAAAGCAAGGTGGCCATGTCACTGTGGCATCATCACAAAGTAGAGATGAAGGACATAGAGATGAAAATATTCCTCCTTCCTCAAATGAAAAAGTGACTTCAAATGTAGAGATAGCCTCGTCAACTCTGGGAGAGGTAAAAATTTCTCTGAGCTGCAGCTCAGCTCTTTTGGGACCAGATTTTCAAATGCCTAATCGAGATCAACTTCTAGAAATGATGGAGGCTAAATGTTCGCGATCATATAAAATCACTGACCCAAATTTTTCTGTTCTGAAACTGTTGAGAGATGTATGTGACTGCCTGTTGGAATTCAGAACTGGTTCAAATGATGATTCGCAAGATGGCTCTGTGATAAGATCAAGTGCTGATGTGTTGAAGGAATCAGAGGCACATGACACTCTGAGTGTTGAAGGAAATAAAGATTTGGACATATTTCTTCCCACTTCAAATGGATCAACTAATGTTAATTCTTCTGCTGCCTTGTTTCCACCCAGAAGTCCTTTTTCTCCAGCCCACCTGAGCTGTCTAGATGTTTCTGTACTGGTTTCCAAGGTGGATGGAACAAATGATATTTCTCAAAGTGATGTCAGAAAGGAGCTGGAGGATCCTATGTGTCCAAATTCACTTAGTTTAGTGGTTGTTCCACAGCATCAGCTTACAGCCGATGATATAAGGTCTTTTCATGATGTTCATGACCTTACAAAAGGAGAAGAAAGTGTTCAAATTTCATGGGTGAATGAAACAACTAATGATTTCCCCCCATCTTTTAACTACATACCCCAAAACCTTGTATTCCAAGATGCTTATGTTAACATTTCTCTGTCTCGTATTGGGGGTGGGGACTGTTGTTCAACTTGTATGGGCAATTGTGTCTTGTTGTCTACACCCTGTGCTTGTGCAAATAAAACTGGGGGTGAATTTGCATACACTGCTCAAGGCCTACTGAAAGAAGAGTTCCTGGAAGAATGCATTGCCATCAGCTGCAACCCTCAACAACATTACTTCTATTGCAAAGATTGTCCGCTTGAAAGATCTAAGAATGATGGTTGCATAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGTAAACAATGTGGCAATAGGGTTATCCAGCGAGGAATAACTTGCAACTTGGAGGTATTTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTGGAGGACCTGCCAAAAGGTGCATTTGTTTGTGAGTTTGTTGGAGAAATATTAACCATTAAAGAGTTGCATGAGAGGAACATGAAATACACCGAAAATGGGAAATTTACATACCCAATTCTACTGGATGCCGATTGGGATTCAGGATTTGTTAAAGATGAAGAAGCTCTGTGCTTGGATGCAGCATCCTTTGGCAACGCTGCTAGGTTTATCAATCACAGATGTCTTGATGCAAACTTGGTTGAGATCCCAGTCGAAGTTGAGGGCCCAGATCATTACTACTATCATTTTGCCTTTTTCACTACCAGAAAAATAGCAGCCCAGGAGGAGCTCACTTGGGATTATGGCATTGACTTTGATGACCATGATCATCCTGCCAAGCTATTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGCATATGAAGCGACCAAATAGATTCATCAGATCTGTGTCAATTGCTGGATGA 2448 0.4179 MAPNARVVAAYRAMSVIGIGESKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEDDENEVPEQKKKTKKVDEEEMEVDEEQMHVEEARPLKRLRLRGQESQPLHPLTNSAPSSDTPPLKKPKLEDNTLSESRSRQQSQKKIFSSDGNARIEALPIPTRDGIVDRGKQPASSQVTRSKRRFMSERASPSGPSKEPTVETGKFLLPNNRMPGIHTLIIPKDEPVDELLDYEVPRPIAVIPPESSSVRVSSMKNGAAGKQGGHVTVASSQSRDEGHRDENIPPSSNEKVTSNVEIASSTLGEVKISLSCSSALLGPDFQMPNRDQLLEMMEAKCSRSYKITDPNFSVLKLLRDVCDCLLEFRTGSNDDSQDGSVIRSSADVLKESEAHDTLSVEGNKDLDIFLPTSNGSTNVNSSAALFPPRSPFSPAHLSCLDVSVLVSKVDGTNDISQSDVRKELEDPMCPNSLSLVVVPQHQLTADDIRSFHDVHDLTKGEESVQISWVNETTNDFPPSFNYIPQNLVFQDAYVNISLSRIGGGDCCSTCMGNCVLLSTPCACANKTGGEFAYTAQGLLKEEFLEECIAISCNPQQHYFYCKDCPLERSKNDGCIEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITCNLEVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTIKELHERNMKYTENGKFTYPILLDADWDSGFVKDEEALCLDAASFGNAARFINHRCLDANLVEIPVEVEGPDHYYYHFAFFTTRKIAAQEELTWDYGIDFDDHDHPAKLFQCRCGSKFCRHMKRPNRFIRSVSIAG 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi980g00006 815 MobiDBLite consensus disorder prediction 60 206 - -
Gabi980g00006 815 Pfam Pre-SET motif 490 635 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi980g00006 815 SUPERFAMILY SET domain 496 799 IPR046341 -
Gabi980g00006 815 ProSiteProfiles Pre-SET domain profile. 534 640 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi980g00006 815 ProSiteProfiles SET domain profile. 643 776 IPR001214 GO:0005515
Gabi980g00006 815 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 813 IPR025776 -
Gabi980g00006 815 Gene3D - 1 60 IPR043017 -
Gabi980g00006 815 MobiDBLite consensus disorder prediction 60 75 - -
Gabi980g00006 815 CDD SET_SETDB-like 510 776 - -
Gabi980g00006 815 Pfam SET domain 655 776 IPR001214 GO:0005515
Gabi980g00006 815 Pfam Ubiquitin-binding WIYLD domain 5 60 IPR018848 -
Gabi980g00006 815 MobiDBLite consensus disorder prediction 83 100 - -
Gabi980g00006 815 MobiDBLite consensus disorder prediction 252 290 - -
Gabi980g00006 815 MobiDBLite consensus disorder prediction 132 146 - -
Gabi980g00006 815 Gene3D SET domain 476 802 IPR046341 -
Gabi980g00006 815 SMART set_7 643 782 IPR001214 GO:0005515
Gabi980g00006 815 SMART preset_2 486 627 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi980g00006 815 MobiDBLite consensus disorder prediction 103 117 - -
Gabi980g00006 815 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 806 - -
Gabi980g00006 815 FunFam SET-domain containing protein lysine methyltransferase family protein 489 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi980g00006 Gabi-Chr980 30039 37653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi980g00006 619 801 C2H2 Transcription Factor Family AT2G23740 40.741 2.81e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi980g00006 Pre-SET 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi980g00006 - - gmx:100787369 1168.3