LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi976g00009	ATGGGTCGGCGAAAGAACAACAATCAGAGTTCGACAAGTAACGAGGAGGAGGGTAACATGAAAAACCACCTTCGGTTCCAGGATGCCGACGAGGTCATCGAGGATGCCGCCGAGAGCTCCAACCTCGACCACTCCATGTGTGACCCCGACTCTTCTGTCTTTCTCGAAGATTCCGATGATAAAACCAGCGCCGACTACTACTTTGATTCCTACTCTCATTTCGGAATTCACGAAGAAATGTTGAAGGACACTGTAAGAACTAAGACTTATCAAAATGTTATTTATCAGAATAAGTTTTTATTCAAGAATAAAATAGTTCTTGATGTGGGCGCTGGGACTGGGATTTTATCACTATTTTGTGCTAAAGCGGGGGCAGAACATGTCTATGCAGTTGAGTGCTCCCATATGGCTGACATGGCAAAGGAGATAGTTGAAGCTAATGGTTACTCTAAAGTTGTGACGGTTTTGAAGGGGAAGATTGAAGAAATTGAACTTCCAGTTGCTAAAGTCGATATAATCATTTCTGAATGGATGGGATATTTCTTGTTGTTTGAGAATATGTTGAATTCTGTACTCTATGCACGTGACAAATGGCTTGTGGATGATGGAATTGTCCTACCAGATAAAGCATCCCTCCATCTCACTGCCATTGAAGATGCAGATTACAAAGAAGATAAAATTGAGTTTTGGAACAATGTCTATGGATTTGACATGAGCTGCATCAAGAAGCAAGCCATAATGGAGCCTCTCGTTGACACAGTTGATCAGAATCAGATAGCTACAAATTGCCAGCTACTCAAGACAATGGATATCTCAAAGATGGCTCCTGGAGATGCTTCATTCACAGCACCTTTTAAGCTTGTAGCTGAACGTGATGATTTTATTCATGCTCTTGTTGCATATTTTGATGTATCATTTACAAAGTGCCATAAATTGATGGGCTTCTCTACAGGGCCAAGATCACGAGCTACACATTGGAAACAAACAGTCCTATATCTGGAAGATGTCTTGACCGTTTGTGTGGGGGAGGCAATAGTAGGGAGCTTGACTGTGGCTCCAAACAAAAAAAATCCTCGTGATGTTGATATAATGCTCAAGTATTCATTCAACGGCAGGCGATGCAATGCTTCAAGGGTTCAATATTACAAGATGCGTTGA	1158	0.4171	MGRRKNNNQSSTSNEEEGNMKNHLRFQDADEVIEDAAESSNLDHSMCDPDSSVFLEDSDDKTSADYYFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNKFLFKNKIVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSKVVTVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDDGIVLPDKASLHLTAIEDADYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDASFTAPFKLVAERDDFIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTVCVGEAIVGSLTVAPNKKNPRDVDIMLKYSFNGRRCNASRVQYYKMR	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi976g00009	385	Gene3D	Vaccinia Virus protein VP39	55	207	IPR029063	-
	Gabi976g00009	385	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	64	365	IPR025799	GO:0016274\|GO:0018216
	Gabi976g00009	385	Gene3D	-	209	385	-	-
	Gabi976g00009	385	MobiDBLite	consensus disorder prediction	1	17	-	-
	Gabi976g00009	385	MobiDBLite	consensus disorder prediction	1	27	-	-
	Gabi976g00009	385	FunFam	probable protein arginine N-methyltransferase 1	55	207	-	-
	Gabi976g00009	385	FunFam	Blast:Protein arginine N-methyltransferase 1	209	385	-	-
	Gabi976g00009	385	Pfam	Ribosomal protein L11 methyltransferase (PrmA)	100	176	-	-
	Gabi976g00009	385	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	70	384	IPR029063	-
	Gabi976g00009	385	PANTHER	PROTEIN ARGININE N-METHYLTRANSFERASE	25	372	IPR025799	GO:0016274\|GO:0018216
	Gabi976g00009	385	CDD	AdoMet_MTases	106	206	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi976g00009	Gabi-Chr976	60557	64291	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi976g00009	67	348	C2H2 Transcription Factor Family	AT3G12270	39.803	7.49e-65	215